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Report for CCDS55588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55588.1 Public Homo sapiens 1 NHSL3 24 110 108 CCDS HistoryNCBI Gene:57648Re-query CCDS DB by CCDS ID:55588.1Re-query CCDS DB by GeneID:57648See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55588.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373480.1 ENSP00000362579.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373480.1Link to Ensembl Protein Viewer:ENSP00000362579.1Re-query CCDS DB by Nucleotide ID:ENST00000373480Re-query CCDS DB by Protein ID:ENSP00000362579
Original member Current member NCBI NM_001198972.2 NP_001185901.1 Accepted alive Link to Nucleotide Sequence:NM_001198972.2Link to Protein Sequence:NP_001185901.1Re-query CCDS DB by Nucleotide ID:NM_001198972Re-query CCDS DB by Protein ID:NP_001185901Link to BLAST:NP_001185901.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185901.1 1035 Q9P206-1 1035 100% 0 0

Chromosomal Locations for CCDS 55588.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 32765770 32765827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32767787 32767957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32768062 32768117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32768652 32768775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32769673 32769786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32769880 32772441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32772865 32772887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3108 nt):
ATGGTGGTGTTCGTTGGCCGCCGCCTCCCGGCGCTCCTAGGGCTGTTTAAGAAGAAGGGCTCTGCCAAGG
CTGAGAATGACAAACATCTAAGTGTAGGGCCTGGCCAGGGGCCAGGGTCTGCAGTGGATGAGCACCAGGA
CAACGTCTTCTTTCCCAGTGGGCGACCCCCCCACCTGGAAGAGCTGCACACTCAGGCCCAGGAGGGGCTC
CGCTCCCTACAACACCAAGAGAAACAGAAACTGAACAAGGGTGGCTGGGACCATGGAGACACCCAGAGTA
TCCAGTCCTCCCGGACGGGGCCGGATGAAGACAACATCTCCTTCTGCAGTCAGACCACATCCTACGTGGC
TGAGAGCTCCACAGCAGAGGACGCGCTCTCCATCCGCTCGGAGATGATCCAGCGCAAAGGCTCCACCTTC
CGACCCCATGACTCATTTCCCAAATCTGGAAAGTCAGGGCGGCGTCGGCGGGAGCGGCGGAGCACTGTGC
TGGGACTCCCGCAGCATGTGCAGAAGGAGCTTGGCCTGAGGAATGAGCGTGAGGCACCAGGCACGCCCCG
GGCTCCTGGTGCACGGGATGCCGTACGCATCCCCACAGTGGACGGCCGCCCCCGAGGCACCTCAGGGATG
GGGGCCCGGGTGTCCCTGCAGGCGCTGGAGGCGGAGGCGGAGGCTGGCGCTGAGACAGAGGCCATGCTGC
AGCGCCACATTGACCGTGTCTACCGGGATGACACCTTTGTTGGCCGGTCCACGGGTACCCGGGCCCCACC
ATTGACCCGGCCCATGTCCCTAGCAGTGCCTGGATTGACAGGAGGGGCAGGGCCTGCAGAGCCCCTGAGC
CCGGCCATGTCCATCTCCCCCCAGGCCACCTACCTGTCGAAGTTGATTCCACATGCTGTGCTGCCGCCTA
CAGTGGACGTGGTGGCCCTAGGCCGCTGCAGCCTGCGCACACTAAGCCGCTGCAGCCTGCACTCGGCCAG
CCCAGCCTCAGTCCGCTCGCTGGGGCGCTTCTCCTCCGTCTCCAGCCCACAGCCCCGCAGCCGCCACCCA
TCCTCCTCCAGTGACACCTGGAGCCACTCTCAATCCTCCGACACCATTGTGTCTGACGGTTCCACCCTCT
CCTCTAAGGGTGGCTCTGAGGGCCAGCCGGAGAGCTCTACGGCTAGCAATAGCGTGGTACCCCCTCCCCA
GGGAGGCAGTGGGAGGGGCTCTCCCAGTGGGGGCAGCACTGCTGAGGCCTCAGACACACTCAGCATTCGG
AGCAGTGGGCAGTTGTCTGGCCGGAGTGTGTCCCTGCGTAAGCTGAAGCGGCCTCCACCCCCTCCCCGCC
GGACCCACTCCCTCCATCAGCGGGGCTTAGCAGTGCCTGATGGGCCATTAGGGTTGCCCCCTAAGCCTGA
GCGTAAGCAGCAGCCCCAGCTGCCTCGGCCACCCACCACTGGTGGCTCAGAAGGGGCGGGGGCAGCACCC
TGTCCACCCAACCCAGCCAACAGCTGGGTACCTGGCTTGTCTCCGGGTGGTTCCCGGCGCCCCCCACGGT
CCCCAGAACGGACACTTTCGCCCTCCAGTGGATACTCGAGCCAAAGTGGTACTCCCACCCTCCCTCCCAA
GGGCCTGGCAGGTCCCCCTGCTTCCCCAGGCAAGGCCCAGCCCCCTAAACCAGAGCGTGTCACGTCTCTT
CGCTCCCCTGGGGCCTCCGTCTCCTCTTCCCTCACGTCTTTATGTTCCTCCTCCTCTGACCCAGCCCCCT
CAGACCGCTCTGGGCCACAGATATTGACCCCCCTGGGTGACAGGTTTGTCATACCTCCTCACCCCAAGGT
GCCTGCCCCCTTCTCCCCACCTCCCTCCAAGCCCAGGAGCCCTAACCCAGCTGCCCCTGCTCTAGCCGCC
CCTGCTGTGGTTCCTGGGCCTGTTTCTACCACTGACGCCAGTCCTCAGTCCCCTCCCACTCCCCAGACAA
CCTTGACTCCACTGCAGGAGTCTCCTGTCATCTCCAAAGACCAGTCACCCCCACCTTCCCCACCCCCATC
TTATCATCCACCCCCACCACCCACTAAGAAGCCAGAGGTGGTTGTGGAGGCACCATCTGCCTCAGAGACT
GCTGAGGAGCCCCTCCAAGATCCCAACTGGCCCCCTCCCCCACCCCCTGCCCCTGAGGAGCAGGACCTGT
CCATGGCTGACTTCCCCCCACCAGAGGAGGCTTTTTTCTCTGTGGCCAGCCCTGAGCCTGCAGGCCCTTC
AGGCTCCCCAGAGCTTGTCAGCTCCCCGGCTGCTTCGTCCTCCTCAGCTACTGCTTTGCAGATTCAGCCC
CCGGGTAGCCCAGACCCTCCTCCAGCTCCGCCAGCCCCAGCTCCTGCTAGTTCCGCCCCAGGGCATGTGG
CCAAGCTCCCTCAGAAGGAACCGGTGGGCTGTAGCAAGGGTGGTGGGCCTCCCAGGGAGGACGTAGGTGC
GCCCCTGGTCACGCCCTCGCTCCTGCAGATGGTGCGGCTGCGCTCCGTGGGTGCTCCAGGAGGGGCTCCC
ACCCCAGCACTGGGGCCATCGGCCCCCCAGAAACCACTGCGAAGGGCCCTGTCAGGGCGGGCCAGCCCAG
TGCCTGCCCCCTCCTCAGGGCTCCATGCTGCGGTCCGACTCAAGGCCTGCAGCCTGGCCGCCAGTGAAGG
CCTCTCAAGTGCTCAGCCCAACGGACCGCCTGAGGCAGAGCCACGGCCTCCCCAGTCCCCTGCCTCAACG
GCCAGTTTCATCTTCTCCAAGGGCTCTAGGAAGCTGCAGCTGGAGCGGCCCGTGTCCCCTGAGACCCAGG
CTGACCTCCAGCGGAATCTGGTGGCAGAACTCCGGAGCATCTCAGAGCAGCGGCCACCCCAGGCCCCAAA
GAAGTCACCTAAGGCTCCCCCACCTGTGGCCCGCAAGCCGTCTGTGGGAGTCCCCCCACCCGCCTCCCCC
AGTTACCCTCGAGCTGAGCCCCTTACTGCTCCTCCCACCAATGGGCTCCCTCACACCCAGGACAGGACTA
AGAGGGAGCTGGCGGAGAATGGAGGTGTCCTGCAGCTGGTGGGCCCAGAGGAGAAGATGGGCCTCCCGGG
CTCAGACTCACAGAAAGAGCTGGCCTGA

Translation (1035 aa):
MVVFVGRRLPALLGLFKKKGSAKAENDKHLSVGPGQGPGSAVDEHQDNVFFPSGRPPHLEELHTQAQEGL
RSLQHQEKQKLNKGGWDHGDTQSIQSSRTGPDEDNISFCSQTTSYVAESSTAEDALSIRSEMIQRKGSTF
RPHDSFPKSGKSGRRRRERRSTVLGLPQHVQKELGLRNEREAPGTPRAPGARDAVRIPTVDGRPRGTSGM
GARVSLQALEAEAEAGAETEAMLQRHIDRVYRDDTFVGRSTGTRAPPLTRPMSLAVPGLTGGAGPAEPLS
PAMSISPQATYLSKLIPHAVLPPTVDVVALGRCSLRTLSRCSLHSASPASVRSLGRFSSVSSPQPRSRHP
SSSSDTWSHSQSSDTIVSDGSTLSSKGGSEGQPESSTASNSVVPPPQGGSGRGSPSGGSTAEASDTLSIR
SSGQLSGRSVSLRKLKRPPPPPRRTHSLHQRGLAVPDGPLGLPPKPERKQQPQLPRPPTTGGSEGAGAAP
CPPNPANSWVPGLSPGGSRRPPRSPERTLSPSSGYSSQSGTPTLPPKGLAGPPASPGKAQPPKPERVTSL
RSPGASVSSSLTSLCSSSSDPAPSDRSGPQILTPLGDRFVIPPHPKVPAPFSPPPSKPRSPNPAAPALAA
PAVVPGPVSTTDASPQSPPTPQTTLTPLQESPVISKDQSPPPSPPPSYHPPPPPTKKPEVVVEAPSASET
AEEPLQDPNWPPPPPPAPEEQDLSMADFPPPEEAFFSVASPEPAGPSGSPELVSSPAASSSSATALQIQP
PGSPDPPPAPPAPAPASSAPGHVAKLPQKEPVGCSKGGGPPREDVGAPLVTPSLLQMVRLRSVGAPGGAP
TPALGPSAPQKPLRRALSGRASPVPAPSSGLHAAVRLKACSLAASEGLSSAQPNGPPEAEPRPPQSPAST
ASFIFSKGSRKLQLERPVSPETQADLQRNLVAELRSISEQRPPQAPKKSPKAPPPVARKPSVGVPPPASP
SYPRAEPLTAPPTNGLPHTQDRTKRELAENGGVLQLVGPEEKMGLPGSDSQKELA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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