NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55509.1 Public Homo sapiens X MAP7D3 24 110 108 CCDS HistoryNCBI Gene:79649Re-query CCDS DB by CCDS ID:55509.1Re-query CCDS DB by GeneID:79649See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55509.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370663.9 ENSP00000359697.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370663.9Link to Ensembl Protein Viewer:ENSP00000359697.5Re-query CCDS DB by Nucleotide ID:ENST00000370663Re-query CCDS DB by Protein ID:ENSP00000359697
Original member Current member NCBI NM_001173516.1 NP_001166987.1 Accepted alive Link to Nucleotide Sequence:NM_001173516.1Link to Protein Sequence:NP_001166987.1Re-query CCDS DB by Nucleotide ID:NM_001173516Re-query CCDS DB by Protein ID:NP_001166987Link to BLAST:NP_001166987.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166987.1 858 Q8IWC1-4 858 100% 0 0

Chromosomal Locations for CCDS 55509.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 136219430 136219495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136219593 136219671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136220765 136220963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136222393 136222486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136224827 136224880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136225909 136226013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136227284 136227431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136228623 136228758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136230385 136230593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136230839 136230966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136231544 136232220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136236244 136236339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136240382 136240486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136241160 136241277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136244632 136244795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136246065 136246148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136246243 136246341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136256304 136256319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2577 nt):
ATGACCAGCCCCCGAGTTGCTGCAGCAAACGAGATTGCTAAGGAAAGGAGGAAGCAAGATGTGGTTAATC
GTGTTGCAACCCATTCCTCAAATATAAGATCGACATTTAAACCAGTAATCGATGGATCCATGCTTAAAAA
TGACATAAAACAAAGATTAGCAAGAGAGCGCAGAGAGGAGAAAAGGAGACAGCAAGACGCCAATAAAGAA
ACACAACTACTTGAAAAAGAAAGAAAGACCAAGCTCCAATATGAAAAACAGATGGAGGAAAGACAGAGAA
AGCTGAAGGAGCGAAAAGAGAAAGAAGAACAACGGAGAATAGCTGCAGAAGAAAAAAGACACCAGAAGGA
TGAAGCACAAAAGGAAAAATTTACAGCCATTCTTTATCGTACTTTGGAACGGAGGAGACTTGCTGATGAT
TATCAGCAAAAAAGATGGTCATGGGGAGGCTCTGCAATGGCGAATTCTGAGAGCAAAACTGCCAATAAAC
GATCTGCATCTACTGAAAAACTTGAACAGGGTACTTCTGCTTTAATCAGACAAATGCCTTTGTCATCTGC
AGGCCTTCAAAATTCCGTTGCCAAAAGGAAAACAGACAAGGAGAGAAGCTCATCTTTAAATAGAAGAGAT
AGTAACCTACATTCGTCTACTGATAAAGAACAAGCCGAAAGGAAGCCACGTGTTACAGGCGTCACCAATT
ATGTAATGCAGTATGTCACTGTACCCTTGCGTAAATGTACTAGCGACGAATTGAGGGCTGTTATGTTTCC
CATGTCGACAATGAAAATACCTCCTCAAACAAAAGTAGAAGAGTCTCCCTTGGAGAAAGTAGAGACACCT
CCCAAGGCAAGTGTGGATGCACCCCCCCAGGTGAATGTGGAAGTATTCTGCAACACAAGCATGGAAGCGT
CCCCCAAGGCAGGTGTGGGCATGGCCCCTGAGGTGAGCACGGACTCATTCCCTGTGGTGAGCGTGGACGT
GTCGCCTGTGGTGAGCACATATGATTCTGAGATGAGCATGGACGCATCCCCCGAGTTGAGCATAGAAGCA
CTCCCGAAGGTGGACCTGGAAACAGTTCCCAAGGTGAGCATAGTAGCATCCCCGGAGGCGAGCCTGGAAG
CACCCCCGGAAGTGAGTCTGGAAGCACTGCCAGAGGTGAGCGTGGAAGCAGCCCCAGAGGGGAGCCTGGA
AGCACCTCCCAAGGGGAGCGCAGAAGTAGCCCCCAAGGAGAGTGTGAAAGGGTCACCCAAGGAGAGCATG
GAGGCATCTCCTGAGGCGATGGTGAAAGCATCCCCCAAGACATCCCTTGAAGCAAGCATGGAAGCATCTC
CCAAGGCAAAAGCGAGAGACGCTCCAAAGAAATCAGAAATGGACAAACAGGCCTTAATCCCTATTGCCAA
GAAGCGTCTATCATCATACACTGAGTGTTATAAATGGTCATCATCTCCTGAAAATGCTTGTGGTCTGCCG
TCTCCCATCAGCACTAACAGGCAAATCCAAAAGAACTGCCCTCCATCACCATTACCACTTATTTCAAAAC
AGTCACCACAGACTTCTTTTCCTTATAAAATAATGCCTATTCAACACACCCTGTCTGTGCAAAGTGCATC
AAGTACTGTCAAAAAGAAAAAAGAAACAGTTTCTAAAACCACTAACAGATGTGAGGCTTTGAGCCAAAGG
CATATGATCTATGAAGAGTCTGGTAATAAGAGTACTGCAGGTATTATGAATGCCGAGGCGGCAACAAAAA
TTTTGACAGAATTGCGCCGCCTTGCTCGTGAACAAAGAGAAAAAGAGGAAGAAGAAAGACAACGGGAAGA
AATGCAGCAAAGGGTCATTAAGAAATCAAAAGACATGGCAAAGGAAGCAGTTGGAGGCCAAGCAGAAGAC
CACTTGAAACTCAAAGATGGGCAGCAACAAAATGAGACTAAAAAGAAGAAAGGATGGCTGGATCAGGAAG
ACCAGGAAGCACCACTGCAGAAAGGGGACGCCAAAATAAAAGCTCAAGAGGAAGCTGACAAACGCAAGAA
AGAACACGAGAGAATTATGTTACAAAATTTACAAGAACGGTTAGAAAGGAAAAAGAGAATAGAAGAAATT
ATGAAGCGGACAAGAAAGACAGATGTGAATGCCTCAAAGGTCACAGAAACATCCAGCCATGACATATATG
AAGAGGCTGAGGCTGACAACGAAGAAAGCGACAAGGACTCATTGAATGAAATGTTTCCATCAGCCATTCT
AAATGGCACAGGCTCACCTACCAAATTTAAAATGCCGTTCAACAATGCCAAGAAAATGACACACAAGCTG
GTATTTCTAGAAGATGGTACCAGCCAGGTCCGTAAAGAGCCAAAAACATATTTTAATGGCGATTTGAAAA
ACTTCAGACAAAAAAGCATGAAAGACACTTCAATACAGGAAGTAGTTTCAAGACCATCTTCCAAAAGAAT
GACCAGTCACACAACGAAAACCAGAAAGGCGGATGAAACCAACACCACCAGCAGATCCTCTGCACAAACA
AAATCTGAAGGATTCCATGACATCTTGCCAAAGTCCTCAGACACCTTTAGACAATAA

Translation (858 aa):
MTSPRVAAANEIAKERRKQDVVNRVATHSSNIRSTFKPVIDGSMLKNDIKQRLARERREEKRRQQDANKE
TQLLEKERKTKLQYEKQMEERQRKLKERKEKEEQRRIAAEEKRHQKDEAQKEKFTAILYRTLERRRLADD
YQQKRWSWGGSAMANSESKTANKRSASTEKLEQGTSALIRQMPLSSAGLQNSVAKRKTDKERSSSLNRRD
SNLHSSTDKEQAERKPRVTGVTNYVMQYVTVPLRKCTSDELRAVMFPMSTMKIPPQTKVEESPLEKVETP
PKASVDAPPQVNVEVFCNTSMEASPKAGVGMAPEVSTDSFPVVSVDVSPVVSTYDSEMSMDASPELSIEA
LPKVDLETVPKVSIVASPEASLEAPPEVSLEALPEVSVEAAPEGSLEAPPKGSAEVAPKESVKGSPKESM
EASPEAMVKASPKTSLEASMEASPKAKARDAPKKSEMDKQALIPIAKKRLSSYTECYKWSSSPENACGLP
SPISTNRQIQKNCPPSPLPLISKQSPQTSFPYKIMPIQHTLSVQSASSTVKKKKETVSKTTNRCEALSQR
HMIYEESGNKSTAGIMNAEAATKILTELRRLAREQREKEEEERQREEMQQRVIKKSKDMAKEAVGGQAED
HLKLKDGQQQNETKKKKGWLDQEDQEAPLQKGDAKIKAQEEADKRKKEHERIMLQNLQERLERKKRIEEI
MKRTRKTDVNASKVTETSSHDIYEEAEADNEESDKDSLNEMFPSAILNGTGSPTKFKMPFNNAKKMTHKL
VFLEDGTSQVRKEPKTYFNGDLKNFRQKSMKDTSIQEVVSRPSSKRMTSHTTKTRKADETNTTSRSSAQT
KSEGFHDILPKSSDTFRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH