NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55504.1 Public Homo sapiens X SLC9A6 24 110 108 CCDS HistoryNCBI Gene:10479Re-query CCDS DB by CCDS ID:55504.1Re-query CCDS DB by GeneID:10479See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55504.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370701.6 ENSP00000359735.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370701.6Link to Ensembl Protein Viewer:ENSP00000359735.1Re-query CCDS DB by Nucleotide ID:ENST00000370701Re-query CCDS DB by Protein ID:ENSP00000359735
Original member Current member EBI ENST00000636092.1 ENSP00000490406.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000636092.1Link to Ensembl Protein Viewer:ENSP00000490406.1Re-query CCDS DB by Nucleotide ID:ENST00000636092Re-query CCDS DB by Protein ID:ENSP00000490406
Original member Current member EBI ENST00000637234.1 ENSP00000490527.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000637234.1Link to Ensembl Protein Viewer:ENSP00000490527.1Re-query CCDS DB by Nucleotide ID:ENST00000637234Re-query CCDS DB by Protein ID:ENSP00000490527
Original member Current member EBI ENST00000636347.1 ENSP00000490648.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000636347.1Link to Ensembl Protein Viewer:ENSP00000490648.1Re-query CCDS DB by Nucleotide ID:ENST00000636347Re-query CCDS DB by Protein ID:ENSP00000490648
Original member Current member EBI ENST00000637581.1 ENSP00000490731.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000637581.1Link to Ensembl Protein Viewer:ENSP00000490731.1Re-query CCDS DB by Nucleotide ID:ENST00000637581Re-query CCDS DB by Protein ID:ENSP00000490731
Original member Current member NCBI NM_001177651.2 NP_001171122.1 Accepted alive Link to Nucleotide Sequence:NM_001177651.2Link to Protein Sequence:NP_001171122.1Re-query CCDS DB by Nucleotide ID:NM_001177651Re-query CCDS DB by Protein ID:NP_001171122Link to BLAST:NP_001171122.1
Original member Current member NCBI NM_001400909.1 NP_001387838.1 Accepted alive Link to Nucleotide Sequence:NM_001400909.1Link to Protein Sequence:NP_001387838.1Re-query CCDS DB by Nucleotide ID:NM_001400909Re-query CCDS DB by Protein ID:NP_001387838Link to BLAST:NP_001387838.1
Original member Current member NCBI NM_001400910.1 NP_001387839.1 Accepted alive Link to Nucleotide Sequence:NM_001400910.1Link to Protein Sequence:NP_001387839.1Re-query CCDS DB by Nucleotide ID:NM_001400910Re-query CCDS DB by Protein ID:NP_001387839Link to BLAST:NP_001387839.1
Original member Current member NCBI NM_001400911.1 NP_001387840.1 Accepted alive Link to Nucleotide Sequence:NM_001400911.1Link to Protein Sequence:NP_001387840.1Re-query CCDS DB by Nucleotide ID:NM_001400911Re-query CCDS DB by Protein ID:NP_001387840Link to BLAST:NP_001387840.1
Original member Current member NCBI NM_001400912.1 NP_001387841.1 Accepted alive Link to Nucleotide Sequence:NM_001400912.1Link to Protein Sequence:NP_001387841.1Re-query CCDS DB by Nucleotide ID:NM_001400912Re-query CCDS DB by Protein ID:NP_001387841Link to BLAST:NP_001387841.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171122.1 649 Q92581-3 649 100% 0 0
NP_001387838.1 649 Q92581-3 649 100% 0 0
NP_001387839.1 649 Q92581-3 649 100% 0 0
NP_001387840.1 649 Q92581-3 649 100% 0 0
NP_001387841.1 649 Q92581-3 649 100% 0 0

Chromosomal Locations for CCDS 55504.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 135985659 135985827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135994786 135994985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135998108 135998185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135998482 135998558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135998856 135998968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136002108 136002213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136010442 136010583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136012949 136013054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136013349 136013437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136016645 136016758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136022586 136022697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136024330 136024483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136030132 136030162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136033414 136033493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136040076 136040181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136044452 136044724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1950 nt):
ATGGACGAGGAGATCGTGTCCGAGAAGCAAGCCGAGGAGAGCCACCGGCAGGACAGCGCCAACCTGCTCA
TCTTCATCCTGCTGCTCACCCTCACCATTCTCACAATCTGGCTCTTCAAGCACCGCCGGGCCCGCTTCCT
GCACGAAACCGGCCTGGCTATGATTTATGGTCTTTTGGTGGGCCTTGTGCTTCGGTATGGCATTCATGTT
CCGAGTGATGTAAATAATGTGACCCTGAGCTGTGAAGTGCAGTCAAGTCCAACTACCTTACTGGTAAATG
TTAGTGGAAAATTTTATGAGTATATGCTGAAAGGAGAGATTAGTTCACATGAACTCAATAATGTTCAAGA
TAATGAAATGCTTAGAAAGGTTACTTTTGATCCAGAAGTATTTTTCAACATATTACTTCCTCCTATCATA
TTTTATGCAGGTTATAGCCTGAAAAGGAGACATTTTTTTCGAAATCTTGGGTCTATCCTAGCATACGCTT
TTCTTGGAACAGCAATTTCTTGTTTCGTTATTGGGTCAATAATGTATGGCTGTGTAACGCTGATGAAGGT
AACGGGACAACTTGCAGGAGATTTTTACTTTACAGATTGCCTACTGTTTGGTGCCATTGTATCAGCAACT
GATCCAGTGACTGTTCTTGCTATATTCCACGAGCTTCAAGTTGATGTTGAACTCTATGCACTTCTTTTTG
GTGAAAGTGTCCTCAATGATGCTGTTGCCATAGTGCTGTCCTCCTCAATAGTGGCATACCAGCCAGCTGG
AGACAACAGTCACACCTTTGATGTCACAGCGATGTTCAAGTCTATTGGGATCTTCCTTGGAATCTTCAGT
GGATCTTTTGCAATGGGTGCTGCTACTGGAGTGGTGACAGCTTTAGTGACAAAGTTCACCAAATTACGGG
AGTTCCAGTTGTTGGAGACAGGCCTGTTCTTCTTGATGTCCTGGAGTACCTTCCTCTTGGCTGAAGCATG
GGGCTTCACAGGTGTAGTTGCAGTATTGTTTTGTGGCATCACACAAGCACATTATACGTATAATAATTTG
TCCACGGAGTCTCAGCATAGAACTAAACAGTTGTTTGAGCTTCTCAATTTCTTGGCAGAGAATTTCATCT
TCTCCTACATGGGGCTGACACTGTTCACCTTCCAGAACCATGTCTTTAACCCAACATTTGTAGTAGGAGC
ATTTGTTGCTATTTTCTTGGGAAGAGCTGCCAATATTTACCCCTTGTCCCTCTTACTTAATTTGGGTAGA
AGAAGTAAGATTGGATCAAATTTTCAACACATGATGATGTTTGCTGGCCTTCGTGGTGCAATGGCATTTG
CCTTGGCCATTCGAGATACTGCCACTTATGCACGGCAAATGATGTTCAGCACCACGCTTCTGATTGTGTT
TTTTACCGTGTGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTTGCATATCAGGGTTGGTGTT
GATTCAGACCAAGAACACTTGGGTGTTCCTGAAAATGAAAGGAGAACTACCAAAGCAGAGAGTGCTTGGC
TTTTCCGGATGTGGTACAACTTTGATCATAACTATCTGAAGCCTCTGCTGACCCACAGCGGGCCTCCGCT
GACAACAACACTCCCTGCCTGCTGTGGACCCATCGCCAGGTGCCTCACCAGCCCCCAGGCTTACGAAAAC
CAGGAACAGTTGAAAGATGATGATTCTGATCTTATTCTCAATGATGGTGACATCAGTTTGACATATGGAG
ATTCTACTGTGAACACTGAACCGGCCACATCCAGCGCCCCAAGGAGATTTATGGGAAACAGTTCTGAAGA
TGCCTTGGATCGGGAGCTTGCATTTGGGGACCATGAACTGGTCATTCGAGGAACACGCCTGGTTCTTCCA
ATGGATGATTCTGAACCCCCGCTAAATTTGTTAGATAATACGAGACATGGTCCAGCCTAA

Translation (649 aa):
MDEEIVSEKQAEESHRQDSANLLIFILLLTLTILTIWLFKHRRARFLHETGLAMIYGLLVGLVLRYGIHV
PSDVNNVTLSCEVQSSPTTLLVNVSGKFYEYMLKGEISSHELNNVQDNEMLRKVTFDPEVFFNILLPPII
FYAGYSLKRRHFFRNLGSILAYAFLGTAISCFVIGSIMYGCVTLMKVTGQLAGDFYFTDCLLFGAIVSAT
DPVTVLAIFHELQVDVELYALLFGESVLNDAVAIVLSSSIVAYQPAGDNSHTFDVTAMFKSIGIFLGIFS
GSFAMGAATGVVTALVTKFTKLREFQLLETGLFFLMSWSTFLLAEAWGFTGVVAVLFCGITQAHYTYNNL
STESQHRTKQLFELLNFLAENFIFSYMGLTLFTFQNHVFNPTFVVGAFVAIFLGRAANIYPLSLLLNLGR
RSKIGSNFQHMMMFAGLRGAMAFALAIRDTATYARQMMFSTTLLIVFFTVWVFGGGTTAMLSCLHIRVGV
DSDQEHLGVPENERRTTKAESAWLFRMWYNFDHNYLKPLLTHSGPPLTTTLPACCGPIARCLTSPQAYEN
QEQLKDDDSDLILNDGDISLTYGDSTVNTEPATSSAPRRFMGNSSEDALDRELAFGDHELVIRGTRLVLP
MDDSEPPLNLLDNTRHGPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH