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Report for CCDS55498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55498.1 Public Homo sapiens X PABIR2 24 110 108 CCDS HistoryNCBI Gene:159090Re-query CCDS DB by CCDS ID:55498.1Re-query CCDS DB by GeneID:159090See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55498.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298090.10 ENSP00000298090.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000298090.10Link to Ensembl Protein Viewer:ENSP00000298090.6Re-query CCDS DB by Nucleotide ID:ENST00000298090Re-query CCDS DB by Protein ID:ENSP00000298090
Original member Current member NCBI NM_001166600.3 NP_001160072.1 Accepted alive Link to Nucleotide Sequence:NM_001166600.3Link to Protein Sequence:NP_001160072.1Re-query CCDS DB by Nucleotide ID:NM_001166600Re-query CCDS DB by Protein ID:NP_001160072Link to BLAST:NP_001160072.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160072.1 241 Q7Z309-4 241 100% 0 0

Chromosomal Locations for CCDS 55498.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134771285 134771354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134781821 134781917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134785886 134785947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134787472 134787533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134788730 134788831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134789085 134789139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134789223 134789266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134789580 134789636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134793815 134793893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134796108 134796205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGGCTCAGGAGAAAATGGAGCTGGACCTTGAGCCTGACACATCTTATGGGGGAACCCTGAGGAGATCCA
GCAGCGCTCCCCTAATCCATGGGCTCAGTGACCTTTCACAGGTTTTCCAACCTTACACACTTAGAACTCG
GAGGAATAGTACAACAATTATGAGCCGTCACAGCCTGTTGCTGTCATCCTCACCTAATCGTATTCCTAGT
AGCAGACTGCATCAGATCAAAAGGGAAGAAGGCCTGGATATGGTGAACAGAGAAACTGCACATGAAAGGG
AAATGCAAACGGCAATGCAGATAAGCCAATCATGGGATGAGAGCTTGAGCCTGAGTGACAGTGATTTTGA
CAAGCCGGAGAAATTATATTCTCCTAAGAGAATTGACTTCACTCCAGTTTCTCCAGCACCTTCACCCACC
AGGGGATTCGGAAAGATGTTCGTGAGCAGCAGTGGATTGCCACCAAGTCCAGTTCCCAGTCCAAGACGAT
TTTCAAGGAGAAGTCAGAGTCCAGTCAAGTGCATTAGACCCAGTGTTCTTGGTCCTCTTAAAAGAAAAGG
TGAAATGGAGACAGAAAGTCAGCCCAAGAGACTCTTCCAAGGCACTACCAATATGTTATCTCCAGATGCC
GCGCAACTGTCTGATCTCAGTTCATGGTGGTGTTATCAAGGAGAAGAAATTCCTGCCTTGACCAGATGTG
TGGAGCATCTACAAATGAATGAATAG

Translation (241 aa):
MAQEKMELDLEPDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRRNSTTIMSRHSLLLSSSPNRIPS
SRLHQIKREEGLDMVNRETAHEREMQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPT
RGFGKMFVSSSGLPPSPVPSPRRFSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRLFQGTTNMLSPDA
AQLSDLSSWWCYQGEEIPALTRCVEHLQMNE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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