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Report for CCDS55425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55425.1 Public Homo sapiens X VCF2 24 110 108 CCDS HistoryNCBI Gene:90736Re-query CCDS DB by CCDS ID:55425.1Re-query CCDS DB by GeneID:90736See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55425.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000425133.2 ENSP00000397188.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000425133.2Link to Ensembl Protein Viewer:ENSP00000397188.2Re-query CCDS DB by Nucleotide ID:ENST00000425133Re-query CCDS DB by Protein ID:ENSP00000397188
Original member Current member NCBI NM_001166700.2 NP_001160172.1 Accepted alive Link to Nucleotide Sequence:NM_001166700.2Link to Protein Sequence:NP_001160172.1Re-query CCDS DB by Nucleotide ID:NM_001166700Re-query CCDS DB by Protein ID:NP_001160172Link to BLAST:NP_001160172.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160172.1 116 Q5XKR9-3 116 100% 0 0

Chromosomal Locations for CCDS 55425.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 55146084 55146311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55159126 55159228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55161137 55161156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (351 nt):
ATGGGAGGCTGCCCTGTACGGAAAAGAAGAAGAAATGGCAGTAAAGAGGGCAACCATCATTCCACCCAGC
CCAAAAGGAATAAGAGAAACCCTATCTTTCAGGATTCTCAAGATACAGAGGTATTTTCATGGAGTGATAA
TGAAAGGAGCAGCAGCCGCATTAATATCCCAGAGAGAGCAAGTGGACCAGAAGGCAACTTAAACCAGATT
GTTACTGAACCCGATGCAAACTTTCCCCAGTTCTTGCATGAGGGGTATGTACCATGCCAAGGTCTTTACT
CCCATATCAACCAGACCTTGAAGGAGGCTCACTTCAACAGCCTGCAGCAGCGAGGGCAAGCTCCAACATG
A

Translation (116 aa):
MGGCPVRKRRRNGSKEGNHHSTQPKRNKRNPIFQDSQDTEVFSWSDNERSSSRINIPERASGPEGNLNQI
VTEPDANFPQFLHEGYVPCQGLYSHINQTLKEAHFNSLQQRGQAPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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