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Report for CCDS55413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55413.1 Public Homo sapiens X CCDC120 24 110 108 CCDS HistoryNCBI Gene:90060Re-query CCDS DB by CCDS ID:55413.1Re-query CCDS DB by GeneID:90060See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55413.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000536628.3 ENSP00000443351.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536628.3Link to Ensembl Protein Viewer:ENSP00000443351.1Re-query CCDS DB by Nucleotide ID:ENST00000536628Re-query CCDS DB by Protein ID:ENSP00000443351
Original member Current member NCBI NM_001163323.3 NP_001156795.1 Accepted alive Link to Nucleotide Sequence:NM_001163323.3Link to Protein Sequence:NP_001156795.1Re-query CCDS DB by Nucleotide ID:NM_001163323Re-query CCDS DB by Protein ID:NP_001156795Link to BLAST:NP_001156795.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156795.1 618 Q96HB5-2 618 100% 0 0

Chromosomal Locations for CCDS 55413.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 49062277 49062289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49062468 49062601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49063861 49064001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49064370 49064664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49065036 49065098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49065454 49065628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49065747 49065845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49067176 49068112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1857 nt):
ATGGAAGTCAAAGCTGCCCTGTTCGGAGAGGCTGCCCCCCAGGTGAAGTCAGAGCGTCTGCGGGGGCTGC
TTGACCGGCAGCGGACCCTGCAGGAGGCCCTGAGCCTGAAACTTCAGGAGCTCCGCAAAGTGTGTCTCCA
GGAGGCGGAGCTGACTGGCCAGCTGCCCCCTGAGTGCCCACTAGAGCCTGGTGAACGGCCCCAGTTGGTC
CGCCGGCGGCCCCCCACAGCCCGCGCCTACCCTCCACCGCACCCCAACCAAGCACACCACTCCTTGTGCC
CTGCTGAGGAGCTGGCTCTTGAGGCCCTGGAACGCGAGGTGTCAGTGCAACAGCAGATCGCGGCGGCCGC
CCGCCGCCTGGCCTTGGCCCCTGATCTGAGCACCGAGCAGCGCCGGCGCCGGCGCCAGGTCCAGGCAGAT
GCACTGAGGAGGCTGCATGAGCTAGAGGAGCAGCTCAGGGATGTCCGGGCCCGCCTTGGCCTCCCAGTGC
TCCCGCTGCCCCAGCCACTGCCACTGTCCACGGGGTCAGTGATCACCACCCAGGGAGTCTGCCTGGGCAT
GCGTCTTGCTCAGCTCAGCCAAGAGGACGTAGTTCTGCACTCAGAGAGCAGCTCCCTCTCAGAGTCTGGG
GCCAGCCATGACAACGAGGAGCCCCATGGCTGCTTCTCTCTGGCCGAGCGCCCCTCACCACCCAAGGCTT
GGGACCAGCTGCGGGCAGTATCTGGGGGGAGCCCTGAGCGGCGAACCCCATGGAAACCACCTCCATCAGA
TCTTTATGGGGATCTGAAGAGCCGGCGGAACTCTGTGGCCAGCCCCACCAGCCCCACACGCTCGCTGCCC
AGGAGTGCCTCCAGTTTTGAGGGGCGAAGTGTGCCTGCCACCCCTGTCCTCACCCGGGGCGCTGGCCCCC
AGCTCTGCAAACCTGAAGGCCTTCATTCTCGTCAGTGGTCCGGCAGCCAGGACTCCCAGATGGGCTTCCC
CCGGGCGGACCCTGCCTCCGATCGCGCCTCCCTCTTCGTAGCTCGCACCCGCCGCAGCAACAGTTCTGAG
GCCCTGCTGGTGGACCGGGCCGCTGGTGGGGGAGCTGGCTCCCCGCCTGCCCCTCTGGCTCCCTCTGCCT
CTGGCCCCCCAGTCTGCAAGAGCAGTGAGGTGCTGTATGAGCGCCCCCAACCAACCCCTGCCTTCTCCTC
CCGCACAGCAGGCCCCCCAGACCCTCCCCGGGCCGCCCGGCCTAGCTCAGCTGCCCCTGCCTCCCGAGGT
GCCCCCCGGCTCCCACCTGTGTGTGGAGACTTCCTCTTGGACTATTCCTTGGACCGGGGCCTGCCCCGCA
GTGGCGGTGGAACAGGCTGGGGGGAGCTGCCGCCTGCAGCTGAGGTCCCAGGACCCCTCTCCCGCCGGGA
TGGGCTCCTCACCATGCTCCCCGGCCCACCACCTGTGTATGCAGCTGACAGCAACAGCCCCCTCCTCCGC
ACCAAGGACCCCCACACCCGTGCCACCCGCACTAAGCCCTGTGGCCTGCCCCCAGAGGCTGCCGAAGGCC
CTGAGGTGCATCCAAACCCTCTGCTGTGGATGCCCCCACCCACCCGTATCCCCTCGGCTGGTGAACGCAG
TGGCCACAAGAACCTGGCTCTGGAGGGGCTGCGGGACTGGTACATCCGGAACTCGGGACTGGCTGCGGGG
CCCCAGCGCCGGCCTGTGCTCCCTTCCGTGGGCCCGCCACACCCACCCTTCCTCCATGCCCGCTGCTATG
AGGTGGGCCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACACTCGAGGAGTTTCACGGCGCC
CCCTGTCTCTGGCAGGTATGGGGGGTGCTTTTACTGA

Translation (618 aa):
MEVKAALFGEAAPQVKSERLRGLLDRQRTLQEALSLKLQELRKVCLQEAELTGQLPPECPLEPGERPQLV
RRRPPTARAYPPPHPNQAHHSLCPAEELALEALEREVSVQQQIAAAARRLALAPDLSTEQRRRRRQVQAD
ALRRLHELEEQLRDVRARLGLPVLPLPQPLPLSTGSVITTQGVCLGMRLAQLSQEDVVLHSESSSLSESG
ASHDNEEPHGCFSLAERPSPPKAWDQLRAVSGGSPERRTPWKPPPSDLYGDLKSRRNSVASPTSPTRSLP
RSASSFEGRSVPATPVLTRGAGPQLCKPEGLHSRQWSGSQDSQMGFPRADPASDRASLFVARTRRSNSSE
ALLVDRAAGGGAGSPPAPLAPSASGPPVCKSSEVLYERPQPTPAFSSRTAGPPDPPRAARPSSAAPASRG
APRLPPVCGDFLLDYSLDRGLPRSGGGTGWGELPPAAEVPGPLSRRDGLLTMLPGPPPVYAADSNSPLLR
TKDPHTRATRTKPCGLPPEAAEGPEVHPNPLLWMPPPTRIPSAGERSGHKNLALEGLRDWYIRNSGLAAG
PQRRPVLPSVGPPHPPFLHARCYEVGQALYGAPSQAPLPHSRSFTAPPVSGRYGGCFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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