NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55375.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55375.1 Public Homo sapiens X BEND2 24 110 108 CCDS HistoryNCBI Gene:139105Re-query CCDS DB by CCDS ID:55375.1Re-query CCDS DB by GeneID:139105See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55375.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380030.4 ENSP00000369369.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380030.4Link to Ensembl Protein Viewer:ENSP00000369369.3Re-query CCDS DB by Nucleotide ID:ENST00000380030Re-query CCDS DB by Protein ID:ENSP00000369369
Original member Current member NCBI NM_001184767.2 NP_001171696.1 Accepted alive Link to Nucleotide Sequence:NM_001184767.2Link to Protein Sequence:NP_001171696.1Re-query CCDS DB by Nucleotide ID:NM_001184767Re-query CCDS DB by Protein ID:NP_001171696Link to BLAST:NP_001171696.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171696.1 645 Q8NDZ0-2 645 100% 0 0

Chromosomal Locations for CCDS 55375.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 18170975 18171204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18174030 18174258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18175972 18176093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18177569 18177769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18180510 18180650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18191001 18191108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18203501 18203915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18212565 18212680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18213774 18213911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18216521 18216733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18220726 18220750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1938 nt):
ATGTCAGAGAGGACCCAGGAACAGGATTTTGTTATTATAACTGTCGACGACAGTGATGATAACAATGATT
GCAGTATTGAGATGGTGGAAGTTTCTGAAACAGCAGATAATTCCACTAATGACATAGCAGATGATTCCAC
TTATGTCACAGCAGATAATCCCACTGATGACACAGCCACACAACCAAATTTTCCAGGCGGCAATGATGGC
CATCACCGTCCACTCCAAATGTCATATGGGTCTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATC
ACAGCTCACTGCAGCCTCAACCTCTTGGACTCAAGCAATTCTTCCACCTCAGCCTTCCCAGTAGCTGGGA
TGACAGGCGCACGCCACCATGCCCAGTAGCCCATGGTGACCAAATAGTTTCACAGATAAACCACCCAGTA
CATTTAAGAAGATACAGTTACAACTCAGAGGAAGTGGATTTTCCAAAAAGAGGAAGATTCTATACTCCAG
AGGTACAGTCTAGCATATCACCACCAGCGGAAAGGCAGGAAACCCATGCCTGGGCCAGCCCTGCTGTAAC
ATCTCTTGAGTCAGCAGCATGTCATGAACTGCAGGAAGCAGACCTCAGTGAGAGTTTATCATATCCCAGA
ATTGTCTCCTCAAGTTCATTACAGCAGTATGTCGCACAAGGTGGCTCATTTCCTTGTTTCGGTATGCCAT
GGAACTTTATCAGTGGAGGTGCTGAAAGTACCAATGCTGTCATCTCATTTGCCAATGCTACTACAGCAGT
ACCTATGGCAGTTCTGTCACGAAGAGAATCCAGTCTGGCAAATAACCCTGGTGTGGTGAATTACTCTGCT
CTACCAGAAAATGAAAATGTGGGCCCAGGTAGAGCCTTGTCATCTTTCTGCTTCCATCCCAATTTGGAAT
CTGGCCCACAAATGAGTTATGGGACAATGAGTTACTCAACTGAAATGAAAAATAACTGTGACCAAGATGA
TGCTTCAGCATCTGCCTGCCTCACTCCCGATTTTGCACTGTTACCTCTGAATATTTTGGTAAAAGTAGAC
ACCAACACGGAAAACAGCGTCAACACAATGAATCGCTCAACTTTATTGGACAGTGACAGTGGCCAGGATT
CTTCCTCATCATCTGTCTGTATCCCTCCCAAGTATGGCTATCTTGGTGATCCAAAAAGAAATGTCAGAGT
ACTTAAAATCCATTTGCTGGCCGTACAAAATATGGCCAAACCTAAGCAAGCAGCCTGCTACTTGGTTCGT
ATTTTGTTCTCCAAGGAAATCCTGATTAGCAGCTCAGTGGATATCCATTTGAAAGACAGCCAATCCCTCG
ACCCGAACAAAATGGCTGCATTGAGAGAATATCTGGCAACAACTTTTCCCACCTGTGATTTGCATGAACA
TGGAAAAGACTGGCAGGACTGTATTTCTGGTATCAATTCTATGATCTACTGTTTATGTTCTGAAGGCAAG
AGTACTCCAAAAACTGTTCGCAAAAATAAAAAACGTACCAACCGTGTTGCATCGGCATCTGCAGATAGAA
ATGACCAAAGGGGCAGAGATGGTGGTGAAGGCTGTTCTTGGATGTTTCAGCCAATGAATAACTCCAAAAT
GAGAGAAAAGAGGAACTTGCAGCCAAACAGTAATGCTATCCCTGAAGGAATGCGAGAACCTTCCACTGAT
AATCCAGAGGAACCTGGTGAAGCATGGAGCTATTTTGGAAGACCATGGAGAAATATACGGATGCCATGTT
CAGTACTGACTTTGGCAAAAACTAAGTCTTGCGCAAGCCTGTCGGCTAGATACCTTATTCAGAAACTCTT
CACAAAAGATGTCCTGGTCCAAAGTAACGTCTATGGCAATCTGAAGCATGGCCTGTGTGCCCTTGACCCC
AATAAGATTAGTGCTCTCCGAGGTTTGTTACACATAGAGTATGTCTGA

Translation (645 aa):
MSERTQEQDFVIITVDDSDDNNDCSIEMVEVSETADNSTNDIADDSTYVTADNPTDDTATQPNFPGGNDG
HHRPLQMSYGSGSVTQAGVQWHDHSSLQPQPLGLKQFFHLSLPSSWDDRRTPPCPVAHGDQIVSQINHPV
HLRRYSYNSEEVDFPKRGRFYTPEVQSSISPPAERQETHAWASPAVTSLESAACHELQEADLSESLSYPR
IVSSSSLQQYVAQGGSFPCFGMPWNFISGGAESTNAVISFANATTAVPMAVLSRRESSLANNPGVVNYSA
LPENENVGPGRALSSFCFHPNLESGPQMSYGTMSYSTEMKNNCDQDDASASACLTPDFALLPLNILVKVD
TNTENSVNTMNRSTLLDSDSGQDSSSSSVCIPPKYGYLGDPKRNVRVLKIHLLAVQNMAKPKQAACYLVR
ILFSKEILISSSVDIHLKDSQSLDPNKMAALREYLATTFPTCDLHEHGKDWQDCISGINSMIYCLCSEGK
STPKTVRKNKKRTNRVASASADRNDQRGRDGGEGCSWMFQPMNNSKMREKRNLQPNSNAIPEGMREPSTD
NPEEPGEAWSYFGRPWRNIRMPCSVLTLAKTKSCASLSARYLIQKLFTKDVLVQSNVYGNLKHGLCALDP
NKISALRGLLHIEYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH