NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55305.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55305.1 Public Homo sapiens 9 SPATA31F1 24 110 108 CCDS HistoryNCBI Gene:259308Re-query CCDS DB by CCDS ID:55305.1Re-query CCDS DB by GeneID:259308See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55305.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378788.4 ENSP00000417711.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378788.4Link to Ensembl Protein Viewer:ENSP00000417711.1Re-query CCDS DB by Nucleotide ID:ENST00000378788Re-query CCDS DB by Protein ID:ENSP00000417711
Original member Current member NCBI NM_001141917.2 NP_001135389.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001141917.2Link to Protein Sequence:NP_001135389.1Re-query CCDS DB by Nucleotide ID:NM_001141917Re-query CCDS DB by Protein ID:NP_001135389Link to BLAST:NP_001135389.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135389.1 1335 Q6ZU69 1335 100% 0 0

Chromosomal Locations for CCDS 55305.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 34723232 34726988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34728022 34728082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34728609 34728654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34729284 34729427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4008 nt):
ATGTTGAGCCCTACTTTTGTTCTGTGGGAAGTTGGATATCCCTTATACATCTATGGCTCCATCTTCATCG
TTATTGTAATTATCTGGCAAGTGAAAAGGAGCCACCATGAATTGAGTTCAGAACCTAAAAGGAGCTGCTG
CCGGTGTCACCAAAAAGTCAGGCAAAGAGCTAGAGATGCAGCATCAACAGCTAGGAGACGTTCCCGGGAA
GAAGCTGAGAAGCCACAGAAGCTGCTCTCCATCATTAAAAGCCAGGGCTGGCTTCCTCTGGAGAGAAGTG
TGCGGCGAATCCTGTGTGCAGATCCCTGCTGCCAAATCTGCAATTCTGTGGCTCTGGAGATTCAGCAATT
GCTGGTGGGTGAGAACAACCAGATCTCCCTGACTTTATCGGGGCCATTGCAGGGCTCCTCTTGCCTAGAG
ATGCTGTCTACGTCTAGTATGTCTTTAGATCAGAGTCTGGAGTTTCATTCCTGGCACACCAGAGAGCTTT
CACTGTCATCTGTAACCCCAACACTGTCACAATTAACAGATCAGAAATCTTTAACCCAGTCAGCTGCCCA
GTCAACGTATGCAGATGGCATACAAGATTACTGGGCTGATCACCTCCAGCTAGGGCAGGAATTTCAAGTG
CCAGATGTGCTCCGGGGCCCAAACACCATAGCTTCTTCAAGGATTGAGAAGCCAAGGGCTCCACTGAACC
AGGAGGAGATGACGCAGAGCAACCCCAGCCTTGTCCAGGGAAACCAAGGCCAGCATCACTTGAATTCCCA
GGTCTCCTTGCTGTCCCTGAACCCAGAAACCCTGAACCGGATGCATCCAATGGCCTTGCATATGGTCCTC
CCTGCCCACCTGCCATTTCTCAGTCCTGAAGTGCTGAGGCTTCTTGAGGTACATGTTAAAAAATGGATGC
ATTTCCAGAGGTGGGGGCTCCCAAGACGTGTGGAGGAGTCCCTGAGGCAGCTTATGCCAAACCCACCATT
GTATTACCAACCTGGAAATGACCAGCCAGTTTCTTTCAACCTGAAGAATACTCCTCAGGTCTCTCTTCAT
AGATTTGAGACCATTTCCCTCCAGACCTGGTGTTCATGTGTGGCTGGCCAGCCCATCCAGACCTTCTGGG
TTTCTGAATGGTCCACAATGAACCCAGAACAAAGACACCACTGTCAGCAAACTCCAAACCCTATGGCTCT
AGCCTTGCCCTCTCCAGCCCTTAAAGCCCTAAGTGGCCCCCATCCACAGTCTGGGGGACAAGATAATGAC
TCAGGGAGTGATCTCCAGCAGAAATACAGCCAGCTATTCTGTGGGCTCCCTTCTCTGCACAGTGAGTCCC
TGGTTGCCACTTTCATGGGATCTCAAGGCCTCCCCAAGATTGAAAATGTGCCCAAGCCCCCCTTGAAGGA
TCCTTTTCTCTTCAATGAGCTCTCCTTCCCCCAACTGCTCCCTAAAACTTCACCCCAGTCAGCCCCACCC
TCTTCCCCACTTTCCCCAAACTGGATGTCTCCATCTGACCATCAACGAGCTCAGATCAATGTCCCATTTC
TGACTCTGGCTGAGTATGAAGCCTTGGAGTGGCACCTGCTACAGAGGCAACTCCAGCTTCAGTGGGGCTG
GCCAGCTGCCCTCCAGAGGTCTCAGCACACCCAGTGCCTCATGCAGCATGAGCCCTGTGGCAAAGCTCAG
TCTCCTGAGACCACGACAGCTTCCCAGACAGGGAAGTCCATCTCAGTGCTCACCAGGGAACTACTCTTCT
TCCCGGAGCATGCCCGGAAGCTGCTGGAATTCCACATCCAGAAACAGTTGATTCGCCATCGCTGGGGCCT
GCCTCAGAAGATCCAGCAGTCCATCCAGTTGCTCCTTACCTCCACTGATCAGCAGACTGTGTCCAGCAGC
AGCACAGCCCTAGCCAACGTGAGCATCCCCCAGCCTGTAGCCCTAGAGGCCAACGGGGCTTGCGATGTGC
TGTCACCCATTGCGGCCCCAGTGTCCATCCCCAGGCCACACTTGTTAACTCAGGTCAAGGCAATACTGCA
GAGCCACATCGACTCCAAATGTGGACAAATCCACCAGGGCAAGATCCCCGCCTGTGTACACAGGTCCTGG
GACTGCAGAATTTCTGGGGTCCTGGCAGTGGCTCCTTTTCCCTGCATTCCAGAAAGCCAGTTCCTGGAAC
TGCAGACAGCAAGTGACCCGGACCTGCATCACAAAGTTATGCCCTGGATGCCAACGGCCCTTGATCAGCA
GCAACAGGCTTTACCAGGTACTGTCACTGAACACCCTAAGCTGCTCCGAGTCTTGTCTGTGGAAGCCATT
GAGAAACTGGAGACAACTTTACGGCACAAGCATCTGGCCTTCCTGTCGGGGCTGCCTGCTCTGTATTATG
TGGCGCTCCCCAGGGCCCTGGCCCCGGCAGTCACTAGCCAATCTGTCATCACAGAGATGGAGCCTAGTCC
CGTGGAAATCCCAGCAGAGCCTCTGATTCAGATGGTTTCATTTGAAGAACAGTGTATAAGTCTTGGGCCA
TGCCCTCAAGGCAACAATGAGAGTTGTACAGACGTTGCAAAAGAGTTCCAGCCTGCAGTGCCAGTAAAAG
GAACAATGGAGACGCTGCCTCTAGAAAGCCAGACGCATCCTACTAGCCCCCACTCACTCCAGACACATAT
CTTGACCAAACTAAACTTCCACCTGAGAAAAAAGGTCCTAGAGATACAATGGGGAATTCCCATTAGGGCA
AGGAAGTCCAGGGAACAAACTGTTGCAGCACCAGAGAACATATCCACACAGAAGTCTCTTGAAAGTCTAA
ACCACCAAGGGGAGACATTGCTCCAGGAACTGCCCATCCCACCAGACACTCTTCCTGCCCCTAATCCAGA
AGGGGTTCACCTTAAAGAACAGCTGGCCAATGACTTGAAGGCAGTGCAGCAGAACCAAAAGCAATCCAAT
TCCAAAGCTGTACCCCAGGGTTCTGCCCACTCGGTCTCCAAGATCTCACAGCCCAGTGGGGACATGACAG
AGGCCCACATGCCTTGTGTTCAGGTAGAGGCCAATGTGAACAAACCCAGCCTGGAGGAACCCTGTGGCCC
TGAGCCTCAAAGCCCTAGCAAGAGCAAGGACCCAGCCCATGTCCCCATGCTAGCAGGAAACAGAGAGGAC
CCAGAGGAAACCAAAGCAGCCAGGGACCACAGAGAAGGGGATGCGGGGTTTGGGCGCTCCTCAACCAGAG
AAGAGAGACGCCCTGCTGAAGACCAGAGGCCAGCAGGGATGCTTCCAAACAAGACACCCCGAGGGTCCTG
GCGATGGAGCCGTAGCTTTCATCTTGCTGATCCCTGTCAACACAGCCCCCAGCATCACCCTCAGCTTAAG
CTCCCACAGCTACCTCCACGAGTCCCTGGGGAGAAAGAGTCTGAGAAGGACCTGCAAGACAGTCAAACCA
AGCTAACTGTCATCCTTGAACCAGCGACAATTCCTGAGAATGCCCAGACTGTGTTGCCCCAGGCTTCACA
GGGTCAGCCTTTCCTGAGCCAACCAACTCAGGCTAAGCCTTTGCAGGGCCAAACTTTGCAAGGCCAAGTT
TTGCATGGGCTGGTGATGCCAGTCCATGCTCAAAAGAAGCCCAGCCTTACAGAGTCTAGCTTCAGAAATA
AAATTAAATGTTTTCTGCAGCATATTAACCCCAAGACAAAAGGCAAAGGGCATGAGGACTCCATGTTCTC
AGCCGCTGCGAAGGTGGCCAAAACCAGAAAAGAAAATGTTGCAAAGAGCCTGGCTCCAGCCAAGAGCCCT
GTGGGGAGAAGTAAGACGGAGAAGCCGACAGGGTGCTCCAAGGCCCAATCTCGTCCTGCTCAGAAGCTGG
TGGGCCCAGCCTTCTTGGATGGTCCCCAATCCCTAGACGATAAGCTCCGGCTACACTCCAGACAACCTGG
CTCTGCCTCAGCCCTGGGCTACCCCCGCCACTGCCCTCGTCACTGTCCTCGAGAGGCTTGTGCCAACAAA
CCAGGGCACCCAACCTAG

Translation (1335 aa):
MLSPTFVLWEVGYPLYIYGSIFIVIVIIWQVKRSHHELSSEPKRSCCRCHQKVRQRARDAASTARRRSRE
EAEKPQKLLSIIKSQGWLPLERSVRRILCADPCCQICNSVALEIQQLLVGENNQISLTLSGPLQGSSCLE
MLSTSSMSLDQSLEFHSWHTRELSLSSVTPTLSQLTDQKSLTQSAAQSTYADGIQDYWADHLQLGQEFQV
PDVLRGPNTIASSRIEKPRAPLNQEEMTQSNPSLVQGNQGQHHLNSQVSLLSLNPETLNRMHPMALHMVL
PAHLPFLSPEVLRLLEVHVKKWMHFQRWGLPRRVEESLRQLMPNPPLYYQPGNDQPVSFNLKNTPQVSLH
RFETISLQTWCSCVAGQPIQTFWVSEWSTMNPEQRHHCQQTPNPMALALPSPALKALSGPHPQSGGQDND
SGSDLQQKYSQLFCGLPSLHSESLVATFMGSQGLPKIENVPKPPLKDPFLFNELSFPQLLPKTSPQSAPP
SSPLSPNWMSPSDHQRAQINVPFLTLAEYEALEWHLLQRQLQLQWGWPAALQRSQHTQCLMQHEPCGKAQ
SPETTTASQTGKSISVLTRELLFFPEHARKLLEFHIQKQLIRHRWGLPQKIQQSIQLLLTSTDQQTVSSS
STALANVSIPQPVALEANGACDVLSPIAAPVSIPRPHLLTQVKAILQSHIDSKCGQIHQGKIPACVHRSW
DCRISGVLAVAPFPCIPESQFLELQTASDPDLHHKVMPWMPTALDQQQQALPGTVTEHPKLLRVLSVEAI
EKLETTLRHKHLAFLSGLPALYYVALPRALAPAVTSQSVITEMEPSPVEIPAEPLIQMVSFEEQCISLGP
CPQGNNESCTDVAKEFQPAVPVKGTMETLPLESQTHPTSPHSLQTHILTKLNFHLRKKVLEIQWGIPIRA
RKSREQTVAAPENISTQKSLESLNHQGETLLQELPIPPDTLPAPNPEGVHLKEQLANDLKAVQQNQKQSN
SKAVPQGSAHSVSKISQPSGDMTEAHMPCVQVEANVNKPSLEEPCGPEPQSPSKSKDPAHVPMLAGNRED
PEETKAARDHREGDAGFGRSSTREERRPAEDQRPAGMLPNKTPRGSWRWSRSFHLADPCQHSPQHHPQLK
LPQLPPRVPGEKESEKDLQDSQTKLTVILEPATIPENAQTVLPQASQGQPFLSQPTQAKPLQGQTLQGQV
LHGLVMPVHAQKKPSLTESSFRNKIKCFLQHINPKTKGKGHEDSMFSAAAKVAKTRKENVAKSLAPAKSP
VGRSKTEKPTGCSKAQSRPAQKLVGPAFLDGPQSLDDKLRLHSRQPGSASALGYPRHCPRHCPREACANK
PGHPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH