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Report for CCDS55297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55297.1 Public Homo sapiens 9 SLC24A2 24 110 108 CCDS HistoryNCBI Gene:25769Re-query CCDS DB by CCDS ID:55297.1Re-query CCDS DB by GeneID:25769See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55297.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000286344.4 ENSP00000286344.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000286344.4Link to Ensembl Protein Viewer:ENSP00000286344.3Re-query CCDS DB by Nucleotide ID:ENST00000286344Re-query CCDS DB by Protein ID:ENSP00000286344
Original member Current member NCBI NM_001193288.3 NP_001180217.1 Accepted alive Link to Nucleotide Sequence:NM_001193288.3Link to Protein Sequence:NP_001180217.1Re-query CCDS DB by Nucleotide ID:NM_001193288Re-query CCDS DB by Protein ID:NP_001180217Link to BLAST:NP_001180217.1
Original member Current member NCBI NM_001375851.1 NP_001362780.1 Accepted alive Link to Nucleotide Sequence:NM_001375851.1Link to Protein Sequence:NP_001362780.1Re-query CCDS DB by Nucleotide ID:NM_001375851Re-query CCDS DB by Protein ID:NP_001362780Link to BLAST:NP_001362780.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180217.1 644 Q9UI40-2 644 100% 0 0
NP_001362780.1 644 Q9UI40-2 644 100% 0 0

Chromosomal Locations for CCDS 55297.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 19516153 19516402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19520894 19521060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19528049 19528138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19550137 19550268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19573351 19573469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19576924 19577022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19619584 19619692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19622261 19622299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19785937 19786866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1935 nt):
ATGGATCTGCAACAAAGCACCACCATCACTTCCCTAGAGAAATGGTGTTTGGATGAGTCACTGTCTGGCT
GCAGAAGACATTATAGTGTCAAGAAAAAACTGAAGTTAATTCGAGTCTTAGGCCTTTTCATGGGTCTGGT
AGCCATTAGCACTGTCTCATTTTCAATCAGTGCCTTTTCTGAGACAGATACACAGAGCACAGGAGAGGCC
AGTGTTGTAAGTGGCCCTAGGGTAGCACAGGGTTACCATCAGAGAACTCTCTTAGATTTAAATGACAAGA
TTCTGGATTATACTCCACAGCCACCTCTTTCTAAGGAAGGCGAGTCTGAGAATAGTACAGATCACGCCCA
AGGAGACTACCCGAAAGACATCTTTTCCCTTGAGGAGAGAAGAAAAGGTGCGATCATTCTGCATGTCATT
GGAATGATCTACATGTTCATAGCCTTAGCCATTGTCTGTGATGAGTTCTTTGTTCCTTCTTTGACTGTCA
TCACTGAAAAACTGGGCATCTCTGATGATGTGGCTGGAGCCACCTTCATGGCTGCAGGAGGGTCAGCCCC
AGAACTTTTCACATCTCTCATAGGGGTATTTATCGCTCACAGCAACGTTGGCATAGGCACAATTGTAGGT
TCAGCAGTATTCAACATCCTCTTTGTTATTGGCATGTGTGCTCTGTTTTCTAGAGAAATCTTAAACCTGA
CATGGTGGCCGCTCTTTCGAGATGTGTCTTTCTACATTGTTGACTTGATCATGCTGATCATATTTTTCCT
GGATAATGTCATCATGTGGTGGGAAAGCTTGCTTCTCTTAACAGCTTATTTTTGCTATGTGGTTTTCATG
AAATTCAACGTCCAAGTAGAAAAATGGGTGAAGCAAATGATAAACCGCAATAAGGTCGTCAAGGTGACAG
CACCAGAAGCCCAAGCAAAGCCATCTGCAGCCAGGGACAAGGATGAACCAACTCTACCGGCTAAGCCGCG
TCTCCAGCGAGGTGGAAGCTCTGCCTCCCTCCACAACAGTCTCATGAGGAATAGCATCTTCCAACTCATG
ATACACACCCTTGACCCACTCGCCGAAGGGAGGTTCAGAGAAAAGGCTTCAATTCTCCACAAGATCGCCA
AGAAGAAATGTCATGTGGATGAGAACGAGAGGCAGAATGGGGCTGCCAACCACGTGGAAAAAATTGAGCT
TCCAAACAGCACCAGCACAGATGTTGAAATGACACCATCCAGTGATGCTTCAGAACCTGTACAAAATGGA
AATCTCTCCCACAACATTGAAGGTGCAGAAGCCCAGACCGCTGATGAGGAGGAGGACCAGCCTCTCAGCC
TTGCCTGGCCTTCTGAAACCCGCAAGCAAGTCACGTTTCTGATTGTTTTCCCCATAGTGTTTCCTCTCTG
GATTACGTTACCTGACGTTCGCAAACCTTCATCGAGGAAGTTTTTTCCCATCACGTTCTTTGGCTCCATT
ACCTGGATTGCAGTATTCTCTTACTTGATGGTCTGGTGGGCGCACCAGGTTGGAGAGACAATTGGCATCA
GTGAAGAGATTATGGGCCTGACCATCTTGGCTGCTGGGACCTCCATCCCTGATCTTATCACCAGTGTCAT
AGTGGCCCGGAAGGGGTTAGGGGACATGGCTGTGTCCAGCTCTGTTGGAAGCAACATTTTTGACATCACT
GTAGGGCTCCCACTGCCCTGGCTCCTGTACACCGTCATTCACAGATTCCAGCCAGTGGCTGTCAGCAGCA
ATGGCCTTTTCTGTGCCATCGTCCTTCTCTTCATCATGCTGCTCTTCGTCATCCTCTCTATCGCCCTCTG
CAAGTGGCGAATGAACAAAATCCTGGGCTTCATCATGTTTGGCCTCTACTTTGTGTTCCTGGTGGTGAGC
GTTCTCCTAGAAGACAGAATTCTTACATGCCCCGTCTCCATCTAG

Translation (644 aa):
MDLQQSTTITSLEKWCLDESLSGCRRHYSVKKKLKLIRVLGLFMGLVAISTVSFSISAFSETDTQSTGEA
SVVSGPRVAQGYHQRTLLDLNDKILDYTPQPPLSKEGESENSTDHAQGDYPKDIFSLEERRKGAIILHVI
GMIYMFIALAIVCDEFFVPSLTVITEKLGISDDVAGATFMAAGGSAPELFTSLIGVFIAHSNVGIGTIVG
SAVFNILFVIGMCALFSREILNLTWWPLFRDVSFYIVDLIMLIIFFLDNVIMWWESLLLLTAYFCYVVFM
KFNVQVEKWVKQMINRNKVVKVTAPEAQAKPSAARDKDEPTLPAKPRLQRGGSSASLHNSLMRNSIFQLM
IHTLDPLAEGRFREKASILHKIAKKKCHVDENERQNGAANHVEKIELPNSTSTDVEMTPSSDASEPVQNG
NLSHNIEGAEAQTADEEEDQPLSLAWPSETRKQVTFLIVFPIVFPLWITLPDVRKPSSRKFFPITFFGSI
TWIAVFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDIT
VGLPLPWLLYTVIHRFQPVAVSSNGLFCAIVLLFIMLLFVILSIALCKWRMNKILGFIMFGLYFVFLVVS
VLLEDRILTCPVSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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