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Report for CCDS55296.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55296.2 Under review, update Homo sapiens 9 TTC39B 24 110 108 CCDS HistoryNCBI Gene:158219Re-query CCDS DB by CCDS ID:55296.2Re-query CCDS DB by GeneID:158219See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 55296.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 55296.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380850.9 ENSP00000370231.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380850.9Link to Ensembl Protein Viewer:ENSP00000370231.5Re-query CCDS DB by Nucleotide ID:ENST00000380850Re-query CCDS DB by Protein ID:ENSP00000370231
Original member Current member NCBI NM_001168340.2 NP_001161812.2 Pending alive Link to Nucleotide Sequence:NM_001168340.2Link to Protein Sequence:NP_001161812.2Re-query CCDS DB by Nucleotide ID:NM_001168340Re-query CCDS DB by Protein ID:NP_001161812Link to BLAST:NP_001161812.2

Chromosomal Locations for CCDS 55296.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 15172019 15172109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15175019 15175135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15177697 15177814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15182307 15182415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15185280 15185406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15186944 15187035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15187971 15188132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15189704 15189792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15190554 15190662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15191190 15191255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15192590 15192695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15199861 15199925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15203823 15203890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15210088 15210164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15211266 15211397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15214139 15214249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15225917 15226012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15267914 15267948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15307084 15307125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1812 nt):
ATGGCGCTCTTAGGCAGCCGAGCGGAGCTGGAAGCGGACGAGGACGTTTTCGAAGATGCCTTGGAAACCA
TCTCAATATCTTCTCACTCAGATATGGCAACAAGCAGCCTTCACTTTGCATCATGTGATACACAACAGGC
GCCCAGACAGCGCGGAGCGTCTACTGTCAGCAGTTCATCATCAACCAAGGTGGATCTCAAGAGTGGCCTC
GAAGAATGTGCTGTGGCATTGAACTTATTTCTAAGCAACAAATTTACAGACGCCTTAGAATTGCTTCGCC
CCTGGGCTAAGGAGAGTATGTACCATGCCTTGGGCTACAGTACCATTGTGGTGTTGCAGGCTGTCCTGAC
CTTCGAGCAACAGGACATCCAGAACGGCATTTCTGCCATGAAGGACGCTTTACAAACCTGCCAAAAATAC
AGGAAAAAATACACAGTTGTAGAATCTTTCTCAAGTCTTCTTTCTAGAGGATCCCTGGAGCAACTGAGTG
AAGAGGAAATGCATGCTGAAATCTGTTATGCCGAGTGTCTCCTACAGAAAGCTGCACTCACGTTTGTGCA
GGATGAAAATATGATCAACTTCATCAAAGGTGGACTCAAAATTAGAACAAGTTACCAAATATATAAAGAA
TGTCTTTCTATCCTGCATGAAATTCAGAAGAACAAACTTCAGCAGGAATTCTTCTATGAGTTTGAAGGGG
GTGTCAAGCTTGGCAGTGGGGCCTTTAATTTGATGCTGTCCCTTTTACCAGCAAGGATTATCAGACTACT
AGAATTTATTGGATTTTCTGGGAATAGGGAGTTGGGCCTCCTGCAGTTACGTGAAGGTGCTTCAGGAAGG
AGCATGAGGTCTGCACTGTGCTGCTTAACCATCTTAGCTTTTCATACTTACATCTCCCTAATACTTGGTA
CAGGAGAAGTGAATGTTGCGGAAGCAGAGCGTCTCCTGGCACCCTTCCTCCAGCAGTTTCCAAATGTACG
CTCAGTATTTCAAAGTGCACAAGAAGTATTTCAAAAATGCATTTCAGTTCAAGAAGAATGGAAACAGTTT
CACCATCTCTGCTACTGGGAGCTAATGTGGATTAATGTTTTCCAACAAAACTGGATGCAGGCATATTACT
ATTCAGATCTGCTTTGCAAAGAGAGTAAATGGTCCAAGGCAACTTATGTGTTCTTGAAAGCAGCAATTTT
GAGTATGCTTCCAGAGGAGGATGTAGTAGCAACGAATGAGAATGTGGTAACTTTATTCAGACAGGTGGAC
AGCTTGAAGCAGAGAATTGCCGGGAAATCTATCCCTACTGAGAAGTTTGCTGTGAGGAAGGCTCGGCGTT
ACTCCGCCTCCTTACCTGCACCTGTGAAGCTCATCTTACCTGCCCTGGAAATGATGTATGTCTGGAATGG
TTTTTCAATAGTGAGCAAAAGAAAAGACCTTTCTGAAAATCTGTTAGTAACTGTTGAAAAAGCTGAGGCA
GCTTTACAAAGTCAAAATTTTAACAGCTTCTCTGTGGATGATGAGTGCTTAGTGAAGTTACTTAAAGGAT
GTTGCCTCAAGAACTTACAGCGGCCCTTGCAAGCTGAACTATGTTACAATCATGTTGTGGAAAGTGAAAA
GCTACTGAAGTATGACCACTACCTAGTGCCGTTCACTCTATTTGAATTGGCATCTTTGTATAAAAGCCAG
GGGGAAATTGACAAGGCCATAAAGTTCCTAGAAACTGCAAGGAACAACTACAAAGATTACTCCCTGGAGT
CCAGACTACACTTCAGAATTCAGGCAGCTCTTCACCTCTGGAGAAAACCTTCCTCAGATTGA

Translation (603 aa):
MALLGSRAELEADEDVFEDALETISISSHSDMATSSLHFASCDTQQAPRQRGASTVSSSSSTKVDLKSGL
EECAVALNLFLSNKFTDALELLRPWAKESMYHALGYSTIVVLQAVLTFEQQDIQNGISAMKDALQTCQKY
RKKYTVVESFSSLLSRGSLEQLSEEEMHAEICYAECLLQKAALTFVQDENMINFIKGGLKIRTSYQIYKE
CLSILHEIQKNKLQQEFFYEFEGGVKLGSGAFNLMLSLLPARIIRLLEFIGFSGNRELGLLQLREGASGR
SMRSALCCLTILAFHTYISLILGTGEVNVAEAERLLAPFLQQFPNVRSVFQSAQEVFQKCISVQEEWKQF
HHLCYWELMWINVFQQNWMQAYYYSDLLCKESKWSKATYVFLKAAILSMLPEEDVVATNENVVTLFRQVD
SLKQRIAGKSIPTEKFAVRKARRYSASLPAPVKLILPALEMMYVWNGFSIVSKRKDLSENLLVTVEKAEA
ALQSQNFNSFSVDDECLVKLLKGCCLKNLQRPLQAELCYNHVVESEKLLKYDHYLVPFTLFELASLYKSQ
GEIDKAIKFLETARNNYKDYSLESRLHFRIQAALHLWRKPSSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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