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Report for CCDS55294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55294.1 Public Homo sapiens 9 TTC39B 24 110 108 CCDS HistoryNCBI Gene:158219Re-query CCDS DB by CCDS ID:55294.1Re-query CCDS DB by GeneID:158219See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55294.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000507993.5 ENSP00000423392.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507993.5Link to Ensembl Protein Viewer:ENSP00000423392.1Re-query CCDS DB by Nucleotide ID:ENST00000507993Re-query CCDS DB by Protein ID:ENSP00000423392
Original member Current member EBI ENST00000507285.5 ENSP00000426539.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507285.5Link to Ensembl Protein Viewer:ENSP00000426539.1Re-query CCDS DB by Nucleotide ID:ENST00000507285Re-query CCDS DB by Protein ID:ENSP00000426539
Original member Current member NCBI NM_001168342.2 NP_001161814.1 Accepted alive Link to Nucleotide Sequence:NM_001168342.2Link to Protein Sequence:NP_001161814.1Re-query CCDS DB by Nucleotide ID:NM_001168342Re-query CCDS DB by Protein ID:NP_001161814Link to BLAST:NP_001161814.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161814.1 517 Q5VTQ0-5 517 100% 0 0

Chromosomal Locations for CCDS 55294.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 15172019 15172109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15175019 15175135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15177697 15177814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15182307 15182415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15185280 15185406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15186944 15187035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15187971 15188132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15189574 15189633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15189725 15189792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15190554 15190662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15191190 15191255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15192590 15192695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15199861 15199925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15203823 15203890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15210088 15210164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15211266 15211384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGTACCATGCCTTGGGCTACAGTACCATTGTGGTGTTGCAGGCTGTCCTGACCTTCGAGCAACAGGACA
TCCAGAACGGCATTTCTGCCATGAAGGACGCTTTACAAACCTGCCAAAAATACAGGAAAAAATACACAGT
TGTAGAATCTTTCTCAAGTCTTCTTTCTAGAGGATCCCTGGAGCAACTGAGTGAAGAGGAAATGCATGCT
GAAATCTGTTATGCCGAGTGTCTCCTACAGAAAGCTGCACTCACGTTTGTGCAGGATGAAAATATGATCA
ACTTCATCAAAGGTGGACTCAAAATTAGAACAAGTTACCAAATATATAAAGAATGTCTTTCTATCCTGCA
TGAAATTCAGAAGAACAAACTTCAGCAGGAATTCTTCTATGAGTTTGAAGGGGGTGTCAAGCTTGGCAGT
GGGGCCTTTAATTTGATGCTGTCCCTTTTACCAGCAAGGATTATCAGACTACTAGAATTTATTGGATTTT
CTGGGAATAGGGAGTTGGGCCTCCTGCAGTTACGTGAAGGTGCTTCAGGAAGGAGCATGAGGTCTGCACT
GTGCTGCTTAACCATCTTAGCTTTTCATACTTACATCTCCCTAATACTTGGTACAGGAGAAGTGAATGTT
GCGGAAGCAGAGCGTCTCCTGGCACCCTTCCTCCAGCAGTTTCCAAATGGCTCACTCGTGTTGTTTTATC
ATGCCCGAATAGAGTTGCTGAAAGGGAATCTTGAAGAGGCACAAGAAGTATTTCAAAAATGCATTTCAGT
TCAAGAAGAATGGAAACAGTTTCACCATCTCTGCTACTGGGAGCTAATGTGGATTAATGTTTTCCAACAA
AACTGGATGCAGGCATATTACTATTCAGATCTGCTTTGCAAAGAGAGTAAATGGTCCAAGGCAACTTATG
TGTTCTTGAAAGCAGCAATTTTGAGTATGCTTCCAGAGGAGGATGTAGTAGCAACGAATGAGAATGTGGT
AACTTTATTCAGACAGGTGGACAGCTTGAAGCAGAGAATTGCCGGGAAATCTATCCCTACTGAGAAGTTT
GCTGTGAGGAAGGCTCGGCGTTACTCCGCCTCCTTACCTGCACCTGTGAAGCTCATCTTACCTGCCCTGG
AAATGATGTATGTCTGGAATGGTTTTTCAATAGTGAGCAAAAGAAAAGACCTTTCTGAAAATCTGTTAGT
AACTGTTGAAAAAGCTGAGGCAGCTTTACAAAGTCAAAATTTTAACAGCTTCTCTGTGGATGATGAGTGC
TTAGTGAAGTTACTTAAAGGATGTTGCCTCAAGAACTTACAGCGGCCCTTGCAAGCTGAACTATGTTACA
ATCATGTTGTGGAAAGTGAAAAGCTACTGAAGTATGACCACTACCTAGTGCCGTTCACTCTATTTGAATT
GGCATCTTTGTATAAAAGCCAGGGGGAAATTGACAAGGCCATAAAGTTCCTAGAAACTGCAAGGAACAAC
TACAAAGATTACTCCCTGGAGTCCAGACTACACTTCAGAATTCAGGCAGCTCTTCACCTCTGGAGAAAAC
CTTCCTCAGATTGA

Translation (517 aa):
MYHALGYSTIVVLQAVLTFEQQDIQNGISAMKDALQTCQKYRKKYTVVESFSSLLSRGSLEQLSEEEMHA
EICYAECLLQKAALTFVQDENMINFIKGGLKIRTSYQIYKECLSILHEIQKNKLQQEFFYEFEGGVKLGS
GAFNLMLSLLPARIIRLLEFIGFSGNRELGLLQLREGASGRSMRSALCCLTILAFHTYISLILGTGEVNV
AEAERLLAPFLQQFPNGSLVLFYHARIELLKGNLEEAQEVFQKCISVQEEWKQFHHLCYWELMWINVFQQ
NWMQAYYYSDLLCKESKWSKATYVFLKAAILSMLPEEDVVATNENVVTLFRQVDSLKQRIAGKSIPTEKF
AVRKARRYSASLPAPVKLILPALEMMYVWNGFSIVSKRKDLSENLLVTVEKAEAALQSQNFNSFSVDDEC
LVKLLKGCCLKNLQRPLQAELCYNHVVESEKLLKYDHYLVPFTLFELASLYKSQGEIDKAIKFLETARNN
YKDYSLESRLHFRIQAALHLWRKPSSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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