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Report for CCDS55240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55240.1 Public Homo sapiens 8 MTFR1 24 110 108 CCDS HistoryNCBI Gene:9650Re-query CCDS DB by CCDS ID:55240.1Re-query CCDS DB by GeneID:9650See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55240.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000458689.2 ENSP00000391502.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000458689.2Link to Ensembl Protein Viewer:ENSP00000391502.2Re-query CCDS DB by Nucleotide ID:ENST00000458689Re-query CCDS DB by Protein ID:ENSP00000391502
Original member NCBI NM_001145838.1 NP_001139310.1 Updated not alive Link to Nucleotide Sequence:NM_001145838.1Link to Protein Sequence:NP_001139310.1Re-query CCDS DB by Nucleotide ID:NM_001145838Re-query CCDS DB by Protein ID:NP_001139310
Current member NCBI NM_001145838.2 NP_001139310.1 Accepted alive Link to Nucleotide Sequence:NM_001145838.2Link to Protein Sequence:NP_001139310.1Re-query CCDS DB by Nucleotide ID:NM_001145838Re-query CCDS DB by Protein ID:NP_001139310Link to BLAST:NP_001139310.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139310.1 300 Q15390-2 300 100% 0 0

Chromosomal Locations for CCDS 55240.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 65669953 65670018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 65693644 65693759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 65704694 65704929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 65707010 65707256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 65707843 65708011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 65708976 65709044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGCTTGGCTGGATTAAGCGCCTAATTAGGATGGTTTTTCAACAAGTTGGAGTAAGCATGCAATCGATTA
ACAGCCATGCAACAGAATGGAGTCCCAGCCACCCAGGAGAGGATGCAGTGGCGTCTTTTGCTGATGTTGG
ATGGGTAGCCAAAGAAGAAGGAGAGTGTTCAGCAAGACTAAGGACAGAGGTCAGATCAAGGCCACCCCTT
CAGGATGACCTTCTTTTCTTTGAGAAGGCCCCAAGCAGACAGATTTCCTTACCAGACTTGTCTCAAGAAG
AGCCTCAGCTGAAGACCCCAGCGCTGGCAAATGAGGAAGCACTGCAGAAGATTTGCGCTCTCGAAAATGA
ACTTGCTGCTCTCAGAGCTCAGATTGCCAAAATTGTGACCCAGCAGGAGCAGCAAAATCTCACTGCAGGT
GACTTAGATTCTACCACATTTGGTACCATACCACCACACCCTCCACCTCCCCCACCGCCCCTGCCTCCCC
CTGCACTGGGGCTCCACCAAAGTACATCTGCTGTTGATCTGATTAAAGAACGAAGAGAGAAAAGAGCCAA
TGCTGGAAAGACTTTGGTTAAGAACAATCCAAAGAAACCTGAAATGCCAAATATGCTAGAGATCCTTAAA
GAGATGAACAGTGTAAAACTTCGGTCAGTGAAGAGGTCAGAGCAAGATGTGAAGCCCAAGCCAGTGGATG
CTACTGACCCTGCTGCCCTCATAGCAGAGGCTCTGAAAAAGAAATTTGCTTATCGGTATCGAAGTGATAG
CCAAGATGAAGTTGAAAAAGGAATTCCAAAGTCTGAATCAGAGGCCACCTCAGAGAGAGTGTTGTTTGGG
CCACACATGTTGAAGCCAACAGGAAAAATGAAGGCTTTAATTGAAAATGTATCAGACTCCTAA

Translation (300 aa):
MLGWIKRLIRMVFQQVGVSMQSINSHATEWSPSHPGEDAVASFADVGWVAKEEGECSARLRTEVRSRPPL
QDDLLFFEKAPSRQISLPDLSQEEPQLKTPALANEEALQKICALENELAALRAQIAKIVTQQEQQNLTAG
DLDSTTFGTIPPHPPPPPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKKPEMPNMLEILK
EMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKKKFAYRYRSDSQDEVEKGIPKSESEATSERVLFG
PHMLKPTGKMKALIENVSDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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