NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55229.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55229.1 Public Homo sapiens 8 RNF170 24 110 108 CCDS HistoryNCBI Gene:81790Re-query CCDS DB by CCDS ID:55229.1Re-query CCDS DB by GeneID:81790See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55229.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000526349.5 ENSP00000435782.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000526349.5Link to Ensembl Protein Viewer:ENSP00000435782.1Re-query CCDS DB by Nucleotide ID:ENST00000526349Re-query CCDS DB by Protein ID:ENSP00000435782
Original member Current member NCBI NM_001160225.2 NP_001153697.1 Accepted alive Link to Nucleotide Sequence:NM_001160225.2Link to Protein Sequence:NP_001153697.1Re-query CCDS DB by Nucleotide ID:NM_001160225Re-query CCDS DB by Protein ID:NP_001153697Link to BLAST:NP_001153697.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153697.1 174 Q96K19-6 174 100% 0 0

Chromosomal Locations for CCDS 55229.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 42856159 42856428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 42861745 42861855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 42865416 42865489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 42870004 42870073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGTACTGTCCCATCTGCCTGCACCAAGCCTCCTTCCCGGTGGAGACCAACTGTGGACATCTTTTTTGTG
GTGCCTGCATTATTGCTTACTGGCGATATGGTTCATGGCTTGGGGCAATCAGTTGTCCAATCTGTAGACA
AACGGTAACCTTACTCCTAACAGTATTTGGTGAAGATGATCAGTCTCAGGATGTTCTGAGATTGCATCAG
GATATTAATGATTATAACCGGAGATTCTCAGGGCAACCCAGATCTATTATGGAGAGAATTATGGATCTAC
CCACTTTACTGAGGCATGCATTCAGGGAAATGTTTTCAGTCGGGGGCCTTTTCTGGATGTTTCGCATCAG
GATAATACTTTGTTTAATGGGAGCTTTTTTCTATCTTATATCACCTCTAGATTTTGTACCTGAAGCCTTG
TTTGGAATTCTAGGCTTTCTAGATGATTTCTTTGTCATCTTTTTATTGCTTATCTACATCTCTATTATGT
ATCGAGAAGTGATAACCCAAAGGCTAACTAGATGA

Translation (174 aa):
MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQ
DINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEAL
FGILGFLDDFFVIFLLLIYISIMYREVITQRLTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH