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Report for CCDS55105.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55105.2 Public Homo sapiens 7 SUGCT 24 110 108 CCDS HistoryNCBI Gene:79783Re-query CCDS DB by CCDS ID:55105.2Re-query CCDS DB by GeneID:79783See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 55105.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335693.9 ENSP00000338475.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335693.9Link to Ensembl Protein Viewer:ENSP00000338475.5Re-query CCDS DB by Nucleotide ID:ENST00000335693Re-query CCDS DB by Protein ID:ENSP00000338475
Original member Current member NCBI NM_001193313.2 NP_001180242.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001193313.2Link to Protein Sequence:NP_001180242.2Re-query CCDS DB by Nucleotide ID:NM_001193313Re-query CCDS DB by Protein ID:NP_001180242Link to BLAST:NP_001180242.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180242.2 438 Q9HAC7-1 438 100% 0 0

Chromosomal Locations for CCDS 55105.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 40135021 40135120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40180947 40180998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40181955 40182028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40188495 40188580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40189544 40189594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40194940 40195060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40237635 40237726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40274513 40274656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40316760 40316855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40449287 40449358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40459101 40459198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40496284 40496386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40749434 40749497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40860316 40860479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGCTGGCGACGCTGGCGAGGGTGGCAGCTCTGCGCAGAACCTGCCTCTTCTCCGGCCGGGGCGGCGGGA
GG
GGGCTGTGGACTGGCCGCCCGCAGTCAGATATGAACAATATAAAGCCATTGGAAGGGGTAAAAATTCT
G
GATCTAACAAGAGTCCTGGCGGGACCTTTTGCTACTATGAATTTAGGAGATCTTGGAGCAGAAGTTATA
AAA
GTGGAGAGACCAGGAGCTGGTGATGATACACGAACTTGGGGGCCACCTTTTGTTGGGACAGAAAGTA
CA
TATTATCTCAGTGTTAACCGAAATAAAAAAAGTATTGCTGTTAATATCAAGGATCCAAAAGGGGTGAA
A
ATCATCAAAGAGCTTGCAGCTGTTTGTGATGTGTTTGTGGAAAACTATGTCCCTGGCAAACTGTCTGCA
ATG
GGCCTGGGATATGAAGATATAGACGAGATTGCTCCTCACATCATCTATTGTTCCATCACAGGGTATG
GT
CAGACAGGTCCAATTTCTCAGCGAGCTGGTTATGATGCTGTTGCCTCGGCTGTTTCTGGTCTGATGCA
C
ATCACAGGGCCTGAGAATGGAGATCCAGTTCGCCCAGGAGTAGCTATGACTGATCTTGCCACTGGCCTG
TAT
GCATATGGAGCTATTATGGCTGGATTGATACAAAAATACAAAACTGGGAAAGGACTGTTCATTGATT
GT
AACCTACTGTCATCCCAGGTGGCGTGTTTGTCTCACATAGCTGCAAATTATCTTATTGGTCAAAAGGA
A
GCAAAACGTTGGGGTACAGCTCATGGCAGTATCGTTCCTTACCAGGCTTTTAAAACCAAGGATGGCTAT
ATT
GTAGTTGGAGCAGGAAATAACCAGCAGTTTGCCACCGTCTGCAAGATCTTGGATTTGCCTGAGTTGA
TT
GATAATTCCAAGTATAAAACTAACCACCTTCGGGTACACAATAGAAAAGAGCTTATTAAAATATTATC
T
GAACGGTTTGAAGAAGAACTGACCAGCAAGTGGTTATATCTTTTTGAAGGCAGTGGAGTCCCGTATGGC
CCA
ATCAACAACATGAAGAATGTATTTGCAGAACCTCAGGTATTACACAATGGCCTCGTTATGGAGATGG
AG
CATCCAACTGTGGGGAAGATTTCCGTCCCAGGCCCAGCTGTGAGATACAGTAAGTTCAAGATGTCAGA
G
GCCAGGCCGCCCCCGCTGCTCGGGCAGCACACAACGCACATCCTGAAGGAGGTCCTGAGATACGATGAC
AGG
GCCATCGGGGAGCTGCTCAGCGCTGGAGTGGTGGACCAACATGAAACTCACTGA


Translation (438 aa):
MLATLARVAALRRTCLFSGRGGGRGLWTGRPQSDMNNIKPLEGVKILDLTRVLAGPFATMNLGDLGAEVI
K
VERP
GAGDDTRTWGPPFVGTESTYYLSVNRNKKSIAVNIKDPKGVKIIKELAAVCDVFVENYVPGKLSA
M
GLGYEDIDEIAPHIIYCSIT
GYGQTGPISQRAGYDAVASAVSGLMHITGPENGDPVRPGVAMTDLATGL
Y
AYGAIMAGLIQKYKTGKGLFIDCNLLSSQ
VACLSHIAANYLIGQKEAKRWGTAHGSIVPYQAFKTKDGY
I
VVGAGNNQQFATVCK
ILDLPELIDNSKYKTNHLRVHNRKELIKILSERFEEELTSKWLYLFEGSGVPYG
P
INNMKNVFAEPQ
VLHNGLVMEMEHPTVGKISVPGPAVRYSKFKMSEARPPPLLGQHTTHILKEVLRYDD
R
AIGELLSAGVVDQHETH




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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