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Report for CCDS55100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55100.1 Public Homo sapiens 7 PDE1C 24 110 108 CCDS HistoryNCBI Gene:5137Re-query CCDS DB by CCDS ID:55100.1Re-query CCDS DB by GeneID:5137See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55100.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396193.5 ENSP00000379496.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396193.5Link to Ensembl Protein Viewer:ENSP00000379496.1Re-query CCDS DB by Nucleotide ID:ENST00000396193Re-query CCDS DB by Protein ID:ENSP00000379496
Original member Current member NCBI NM_001191058.4 NP_001177987.2 Accepted alive Link to Nucleotide Sequence:NM_001191058.4Link to Protein Sequence:NP_001177987.2Re-query CCDS DB by Nucleotide ID:NM_001191058Re-query CCDS DB by Protein ID:NP_001177987Link to BLAST:NP_001177987.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177987.2 769 Q14123-3 769 99.7399% 0 2

Chromosomal Locations for CCDS 55100.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 31753384 31753553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31775664 31775732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31809031 31809108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31815924 31816154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31823073 31823248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31824867 31824987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31828292 31828373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31837180 31837300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31837870 31837971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31847968 31848096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31850641 31850741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31864942 31865082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31873292 31873408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31877970 31878036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31878996 31879178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 31880747 31880860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32169785 32169956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32209489 32209539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32298651 32298735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2310 nt):
ATGACGGACGCCGGCAACAGGAAGGAGGGCTTCAAAAAATGCCGGAGCGCCACTTTCAGCATCGATGGCT
ACAGCTTCACCATAGTTGCAAATGAAGCTGGAGACAAGAATGCCAGACCACTGGCCCGCTTCTCTCGGTC
TAAGTCACAGAACTGTCTGTGGAACTCCCTCATCGATGGGCTCACAGGGAATGTCAAGGAGAAGCCAAGG
CCAACAATTGTCCATGACCCTCGACCCCCAGAGGAGATCCTAGCTGATGAATTGCCACAGCTGGATAGCC
CAGAAGTCTTGGTGAAGACATCCTTCAGATTACGGTCTTTGGTCAAACAATTAGAGAGAGGGGAAGCTTC
AGTGGTAGATCTTAAGAAGAATTTGGAATATGCAGCCACAGTGCTTGAATCTGTGTATATTGATGAAACA
AGGAGACTCCTGGATACAGAGGATGAGCTCAGTGACATTCAGTCAGATGCTGTGCCTTCTGAGGTCCGAG
ACTGGCTGGCCTCCACCTTCACGCGGCAGATGGGGATGATGCTCAGGAGGAGCGACGAGAAGCCCCGGTT
CAAGAGCATCGTTCACGCAGTGCAGGCTGGGATATTTGTGGAGAGAATGTATAGACGGACATCAAACATG
GTTGGACTGAGCTATCCACCAGCTGTTATTGAGGCATTAAAGGATGTGGACAAGTGGTCCTTTGACGTCT
TTTCCCTCAATGAGGCCAGTGGGGATCATGCACTGAAATTTATTTTCTATGAACTACTCACACGTTATGA
TCTGATCAGCCGTTTCAAGATCCCCATTTCTGCACTTGTCTCATTTGTGGAGGCCCTGGAAGTGGGATAC
AGCAAGCACAAAAATCCTTACCATAACTTAATGCACGCTGCCGATGTTACACAGACAGTGCATTACCTCC
TCTATAAGACAGGAGTGGCGAACTGGCTGACGGAGCTGGAGATCTTTGCTATAATCTTCTCAGCTGCCAT
CCATGACTACGAGCATACCGGAACCACCAACAATTTCCACATTCAGACTCGGTCTGATCCAGCTATTCTG
TATAATGACAGATCTGTACTGGAGAATCACCATTTAAGTGCAGCTTATCGCCTTCTGCAAGATGACGAGG
AAATGAATATTTTGATTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACCTTGGTAATTGAAATGGT
GATGGCCACAGATATGTCTTGTCACTTCCAACAAATCAAAGCAATGAAGACTGCTCTGCAGCAGCCAGAA
GCCATTGAAAAGCCAAAAGCCTTATCCCTTATGCTGCATACAGCAGATATTAGCCATCCAGCAAAAGCAT
GGGACCTCCATCATCGCTGGACAATGTCACTCCTGGAGGAGTTCTTCAGACAGGGTGACAGAGAAGCAGA
GCTGGGGCTGCCTTTTTCTCCTCTGTGTGACCGAAAGTCCACTATGGTTGCTCAGTCACAAGTAGGTTTC
ATTGATTTCATCGTGGAACCCACCTTCACTGTGCTTACGGACATGACCGAGAAGATTGTGAGTCCATTAA
TCGATGAAACCTCTCAAACTGGTGGGACAGGACAGAGGCGTTCGAGTTTGAATAGCATCAGCTCGTCAGA
TGCCAAGCGATCAGGTGTCAAGACCTCTGGTTCAGAGGGAAGTGCCCCGATCAACAATTCTGTCATCTCC
GTTGACTATAAGAGCTTTAAAGCTACTTGGACGGAAGTGGTGCACATCAATCGGGAGAGATGGAGGGCCA
AGGTACCCAAAGAGGAGAAGGCCAAGAAGGAAGCAGAGGAAAAGGCTCGCCTGGCCGCAGAGGAGCAGCA
AAAGGAAATGGAAGCCAAAAGCCAGGCTGAAGAAGGCGCATCTGGCAAAGCTGAGAAAAAGACGTCTGGA
GAAACTAAGAATCAAGTCAATGGAACACGGGCAAACAAAAGTGACAACCCTCGTGGGAAAAACTCCAAAG
CCGAGAAGTCATCAGGAGAACAGCAACAGAATGGTGACTTCAAAGATGGTAAAAATAAGACAGACAAGAA
GGATCACTCTAACATCGGAAATGATTCAAAGAAAACAGATGGCACAAAACAGCGTTCTCACGGCTCACCA
GCCCCAAGCACCAGCTCCACGTGTCGCCTTACGTTGCCAGTCATCAAGCCTCCTTTGCGTCATTTTAAAC
GCCCTGCTTACGCATCTAGCTCCTATGCACCTTCAGTCTCAAAGAAAACTGATGAGCATCCTGCAAGGTA
CAAGATGCTGGATCAGAGGATCAAAATGAAAAAGATTCAGAACATCTCACATAACTGGAACAGAAAATAG

Translation (769 aa):
MTDAGNRKEGFKKCRSATFSIDGYSFTIVANEAGDKNARPLARFSRSKSQNCLWNSLIDGLTGNVKEKPR
PTIVHDPRPPEEILADELPQLDSPEVLVKTSFRLRSLVKQLERGEASVVDLKKNLEYAATVLESVYIDET
RRLLDTEDELSDIQSDAVPSEVRDWLASTFTRQMGMMLRRSDEKPRFKSIVHAVQAGIFVERMYRRTSNM
VGLSYPPAVIEALKDVDKWSFDVFSLNEASGDHALKFIFYELLTRYDLISRFKIPISALVSFVEALEVGY
SKHKNPYHNLMHAADVTQTVHYLLYKTGVANWLTELEIFAIIFSAAIHDYEHTGTTNNFHIQTRSDPAIL
YNDRSVLENHHLSAAYRLLQDDEEMNILINLSKDDWREFRTLVIEMVMATDMSCHFQQIKAMKTALQQPE
AIEKPKALSLMLHTADISHPAKAWDLHHRWTMSLLEEFFRQGDREAELGLPFSPLCDRKSTMVAQSQVGF
IDFIVEPTFTVLTDMTEKIVSPLIDETSQTGGTGQRRSSLNSISSSDAKRSGVKTSGSEGSAPINNSVIS
VDYKSFKATWTEVVHINRERWRAKVPKEEKAKKEAEEKARLAAEEQQKEMEAKSQAEEGASGKAEKKTSG
ETKNQVNGTRANKSDNPRGKNSKAEKSSGEQQQNGDFKDGKNKTDKKDHSNIGNDSKKTDGTKQRSHGSP
APSTSSTCRLTLPVIKPPLRHFKRPAYASSSYAPSVSKKTDEHPARYKMLDQRIKMKKIQNISHNWNRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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