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Report for CCDS55078.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55078.1 Public Homo sapiens 7 SUN1 24 110 108 CCDS HistoryNCBI Gene:23353Re-query CCDS DB by CCDS ID:55078.1Re-query CCDS DB by GeneID:23353See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55078.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000457378.6 ENSP00000395952.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457378.6Link to Ensembl Protein Viewer:ENSP00000395952.2Re-query CCDS DB by Nucleotide ID:ENST00000457378Re-query CCDS DB by Protein ID:ENSP00000395952
Original member Current member NCBI NM_001171945.2 NP_001165416.1 Accepted alive Link to Nucleotide Sequence:NM_001171945.2Link to Protein Sequence:NP_001165416.1Re-query CCDS DB by Nucleotide ID:NM_001171945Re-query CCDS DB by Protein ID:NP_001165416Link to BLAST:NP_001165416.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165416.1 278 O94901-7 278 100% 0 0

Chromosomal Locations for CCDS 55078.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 817457 817499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 832505 832601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 838798 838986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 841946 842130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 843206 843232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 843341 843636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGGGGAGGATTTCTCCCGGCTCCCCAGGGCTCCCCAGGACAGTATGGTTTGAAGTGGTGAACATGGATT
TTTCTCGGCTTCACATGTACAGTCCTCCCCAGTGTGTGCCGGAGAACACGGGCTACACGTATGCGCTCAG
TTCCAGCTATTCTTCAGATGCTCTGGATTTTGAGACGGAGCACAAATTGGACCCTGTATTTGATTCTCCA
CGGATGTCCCGCCGTAGTTTGCGCCTGGCCACGACAGCATGCACCCTGGGGGATGGTGAGGCTGTGGGTG
CCGACAGCGGCACCAGCAGCGCTGTCTCCCTGAAGAACCGAGCGGCCAGAACAACAAAACAGCGCAGAAG
CACAAACAAATCAGCTTTTAGTATCAACCACGTGTCAAGGCAGGTCACGTCCTCTGGCGTCAGCCACGGC
GGCACTGTCAGCCTGCAGGATGCTGTGACTCGACGGCCTCCTGTATTGGACGAGTCTTGGATTCGTGAAC
AGACCACAGTGGACCACTTCTGGGGTCTTGATGATGATGGTGATCTTAAAGGTGGAAATAAAGCTGCCAT
TCAGGGAAACGGGGATGTGGGAGCCGCCGCCGCCACCGCGCACAACGGCTTCTCCTGCAGCAACTGCAGC
ATGCTGTCCGAGCGCAAGGACGTGCTCACGGCGCACCCCGCGGCCCCCGGGCCCGTGTCGAGAGTTTATT
CTAGGGACAGGAATCAAAAATGTAAGTCTCAGTCCTTTAAAACTCAGAAAAAGGTGTGTTTTCCAAATTT
AATATTTCCTTTCTGTAAGTCTCAGTGTCTGCACTATTTGTCTTGGAGACTTAAAATTATCCCTTGA

Translation (278 aa):
MGRISPGSPGLPRTVWFEVVNMDFSRLHMYSPPQCVPENTGYTYALSSSYSSDALDFETEHKLDPVFDSP
RMSRRSLRLATTACTLGDGEAVGADSGTSSAVSLKNRAARTTKQRRSTNKSAFSINHVSRQVTSSGVSHG
GTVSLQDAVTRRPPVLDESWIREQTTVDHFWGLDDDGDLKGGNKAAIQGNGDVGAAAATAHNGFSCSNCS
MLSERKDVLTAHPAAPGPVSRVYSRDRNQKCKSQSFKTQKKVCFPNLIFPFCKSQCLHYLSWRLKIIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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