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Report for CCDS55056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55056.1 Public Homo sapiens 6 THEMIS 24 110 108 CCDS HistoryNCBI Gene:387357Re-query CCDS DB by CCDS ID:55056.1Re-query CCDS DB by GeneID:387357See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55056.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000630369.2 ENSP00000487358.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000630369.2Link to Ensembl Protein Viewer:ENSP00000487358.1Re-query CCDS DB by Nucleotide ID:ENST00000630369Re-query CCDS DB by Protein ID:ENSP00000487358
Original member Current member NCBI NM_001164685.2 NP_001158157.1 Accepted alive Link to Nucleotide Sequence:NM_001164685.2Link to Protein Sequence:NP_001158157.1Re-query CCDS DB by Nucleotide ID:NM_001164685Re-query CCDS DB by Protein ID:NP_001158157Link to BLAST:NP_001158157.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158157.1 680 Q8N1K5-4 680 100% 0 0

Chromosomal Locations for CCDS 55056.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 127709985 127710016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127719688 127719823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127807216 127807332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127812883 127813931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127829476 127829934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127855030 127855188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127900842 127900932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2043 nt):
ATGGCATTATCACTGGAAGAATTCGTCCACTCCCTTGACCTCAGGACCCTACCCAGGGTTCTAGAAATCC
AGGCAGGCATCTATCTTGAAGGCTCTATTTATGAAATGTTTGGAAATGAATGCTGTTTTTCAACAGGAGA
AGTGATTAAAATTACTGGTCTCAAAGTTAAGAAGATCATAGCTGAAATTTGTGAGCAGATTGAAGGTTGT
GAGTCTCTACAGCCATTTGAACTGCCTATGAATTTTCCAGGTCTTTTTAAGATTGTGGCTGATAAAACTC
CATACCTTACTATGGAAGAAATCACAAGGACCATTCATATTGGACCAAGTAGACTAGGGCATCCTTGCTT
CTATCATCAGAAGGATATAAAACTAGAGAACCTCATCATAAAGCAGGGTGAGCAAATCATGCTCAACTCA
GTTGAAGAGATTGATGGAGAAATAATGGTGAGCTGTGCAGTAGCAAGGAATCATCAAACTCACTCATTTA
ATTTGCCTTTGTCACAAGAAGGAGAATTCTACGAGTGTGAAGATGAACGTATTTACACTCTAAAGGAGAT
TGTTGAATGGAAGATTCCTAAGAACAGAACAAGAACTGTAAACCTTACAGATTTTTCAAATAAGTGGGAC
TCAACGAATCCATTTCCTAAAGACTTTTATGGTACCCTGATTCTCAAGCCTGTTTATGAAATTCAAGGTG
TGATGAAATTTCGAAAAGATATAATCCGCATCCTCCCCAGTCTAGATGTCGAAGTCAAAGACATCACTGA
TTCTTACGATGCTAACTGGTTTCTTCAGCTGTTATCAACAGAAGATCTTTTTGAAATGACTAGTAAAGAG
TTCCCCATAGTGACTGAAGTCATAGAAGCACCTGAAGGAAACCACCTGCCCCAAAGCATTTTACAGCCTG
GGAAAACCATTGTGATCCACAAAAAGTACCAGGCATCAAGAATCTTAGCTTCAGAAATTAGAAGCAATTT
TCCTAAAAGACACTTCTTGATCCCCACTAGCTATAAAGGCAAGTTCAAGCGGCGACCGAGGGAGTTCCCA
ACGGCCTATGACCTAGAGATCGCTAAGAGTGAAAAGGAGCCTCTTCACGTGGTGGCCACCAAAGCGTTTC
ATTCCCCTCATGACAAGCTGTCATCCGTATCTGTTGGGGACCAGTTTCTGGTGCATCAGTCAGAGACGAC
TGAAGTCCTCTGTGAGGGAATAAAAAAAGTGGTGAATGTTCTGGCCTGTGAAAAAATCCTCAAAAAGTCC
TATGAGGCTGCGCTGCTCCCTTTGTACATGGAAGGAGGTTTTGTAGAGGTGATTCATGATAAGAAACAGT
ACCCGATTTCTGAGCTCTGTAAACAGTTCCGTTTGCCCTTCAATGTGAAGGTGTCTGTCAGGGATCTTTC
CATTGAAGAGGACGTGTTGGCTGCCACACCAGGACTGCAGTTGGAGGAGGACATTACAGACTCTTACCTA
CTCATAAGTGACTTTGCCAACCCCACGGAGTGCTGGGAAATTCCTGTGGGCCGCTTGAATATGACTGTTC
AGTTAGTTAGTAATTTCTCTAGGGATGCAGAACCATTTCTAGTCAGGACTCTGGTAGAAGAGATCACTGA
AGAGCAATATTACATGATGCGGAGATATGAAAGCTCAGCCTCACATCCCCCACCTCGCCCTCCGAAACAC
CCCTCAGTAGAGGAAACAAAGTTAACCCTGCTAACCTTAGCAGAAGAAAGGACGGTAGACCTGCCCAAGT
CTCCCAAGGCTGGAGTGCAATGGCGTGATCTTGGCTCGCTGCAACCTCTGCCTCCCGGGTTCAAGCAATT
CTCTGCCTCAGCCTCCCACGTAGCTGGGATTACAGGCACCCCCCACCACGTCCAGCGTCATCACGTAGAC
ATAACCAAGAAACTTCACCCAAATCAAGCTGGCCTGGATTCAAAAGTACTGATTGGTAGTCAGAATGATT
TGGTGGATGAAGAGAAAGAAAGGAGCAACCGTGGGGCCACAGCAATAGCAGAAACATTCAAAAATGAAAA
ACATCAAAAATAA

Translation (680 aa):
MALSLEEFVHSLDLRTLPRVLEIQAGIYLEGSIYEMFGNECCFSTGEVIKITGLKVKKIIAEICEQIEGC
ESLQPFELPMNFPGLFKIVADKTPYLTMEEITRTIHIGPSRLGHPCFYHQKDIKLENLIIKQGEQIMLNS
VEEIDGEIMVSCAVARNHQTHSFNLPLSQEGEFYECEDERIYTLKEIVEWKIPKNRTRTVNLTDFSNKWD
STNPFPKDFYGTLILKPVYEIQGVMKFRKDIIRILPSLDVEVKDITDSYDANWFLQLLSTEDLFEMTSKE
FPIVTEVIEAPEGNHLPQSILQPGKTIVIHKKYQASRILASEIRSNFPKRHFLIPTSYKGKFKRRPREFP
TAYDLEIAKSEKEPLHVVATKAFHSPHDKLSSVSVGDQFLVHQSETTEVLCEGIKKVVNVLACEKILKKS
YEAALLPLYMEGGFVEVIHDKKQYPISELCKQFRLPFNVKVSVRDLSIEEDVLAATPGLQLEEDITDSYL
LISDFANPTECWEIPVGRLNMTVQLVSNFSRDAEPFLVRTLVEEITEEQYYMMRRYESSASHPPPRPPKH
PSVEETKLTLLTLAEERTVDLPKSPKAGVQWRDLGSLQPLPPGFKQFSASASHVAGITGTPHHVQRHHVD
ITKKLHPNQAGLDSKVLIGSQNDLVDEEKERSNRGATAIAETFKNEKHQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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