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Report for CCDS55030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55030.1 Public Homo sapiens 6 RIMS1 24 110 108 CCDS HistoryNCBI Gene:22999Re-query CCDS DB by CCDS ID:55030.1Re-query CCDS DB by GeneID:22999See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55030.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000401910.7 ENSP00000385649.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000401910.7Link to Ensembl Protein Viewer:ENSP00000385649.3Re-query CCDS DB by Nucleotide ID:ENST00000401910Re-query CCDS DB by Protein ID:ENSP00000385649
Original member Current member NCBI NM_001168407.2 NP_001161879.1 Accepted alive Link to Nucleotide Sequence:NM_001168407.2Link to Protein Sequence:NP_001161879.1Re-query CCDS DB by Nucleotide ID:NM_001168407Re-query CCDS DB by Protein ID:NP_001161879Link to BLAST:NP_001161879.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161879.1 1012 Q86UR5-12 1012 100% 0 0

Chromosomal Locations for CCDS 55030.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72213123 72213222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72233773 72233840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72235618 72235728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72237823 72237922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72242314 72242437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72245815 72245861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72248015 72248127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72250330 72250460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72250921 72251092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72251215 72251368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72252761 72252832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72258128 72258281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72258986 72259111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72260705 72260767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72265960 72266049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72284047 72284118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72291934 72292046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72307258 72307370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72313506 72313672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72333600 72333835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72390598 72390736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72392698 72392810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72398249 72398350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72398955 72399094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72400496 72400714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3039 nt):
ATGTGTGCACCTGGGATTCATGTCTCTTCAGAAGGGTGGGAAGAAGTGAGGTCTGTTGATTCCGAAGAGG
GAACAATTGAAGCTCGACGAGCAGTTGCTGGTGATTTGGATTATTACTGGTTGGATCCTGCCACGTGGCA
CAGCCGGGAGACATCACCTATTAGTTCGCATCCTGTAACGTGGCAACCATCTAAAGAGGGGGACCGATTA
ATTGGACGTGTTATTCTTAACAAGAGAACAACCATGCCCAAAGACTCAGGTGCATTGCTGGGTCTGAAAG
TTGTTGGAGGAAAAATGACTGACTTAGGACGACTTGGTGCTTTCATCACCAAAGTAAAGAAGGGTAGCCT
AGCAGATGTAGTTGGACACCTAAGAGCAGGGGATGAAGTTCTAGAATGGAATGGTAAACCCCTGCCGGGA
GCTACAAATGAAGAAGTTTACAACATTATTTTAGAATCAAAATCAGAACCTCAAGTTGAAATTATTGTTT
CAAGGCCTATTGGTGACATTCCCCGGATTCCTGAGAGCTCCCACCCTCCACTGGAGTCCAGTTCAAGTTC
CTTTGAATCTCAGAAGATGGAAAGGCCTTCCATTTCTGTTATTTCTCCAACAAGTCCTGGAGCTCTAAAA
GATGCCCCACAAGTCTTACCAGGGCAACTTTCTGTGAAGTTGTGGTATGATAAAGTGGGACACCAGCTGA
TTGTAAATGTTCTGCAAGCAACAGATCTACCTGCTAGAGTAGATGGACGTCCTCGAAATCCCTATGTAAA
AATGTATTTTCTTCCAGATAGAAGTGATAAAAGTAAAAGGAGGACCAAAACAGTAAAGAAAATACTAGAA
CCAAAATGGAATCAAACTTTTGTCTATTCACATGTACATCGTAGAGATTTTAGAGAACGAATGTTAGAAA
TAACTGTGTGGGACCAACCAAGAGTGCAAGAAGAAGAAAGTGAATTTCTTGGAGAGATCCTCATAGAATT
GGAGACAGCGCTTTTAGATGATGAACCGCATTGGTATAAACTTCAGACACATGATGAGTCTTCACTACCT
CTGCCTCAGCCATCACCTTTCATGCCAAGGCGACATATTCATGGAGAAAGCTCTAGCAAAAAGCTACAAA
GATCTCAGCGAATCAGTGATAGTGACATCTCAGATTATGAGGTTGATGATGGTATTGGCGTAGTTCCTCC
AGGCTATAGGTCTAGTGCTAGAGAAAGTAAATCTACAACATTAACTGTGCCAGAACAGCAAAGAACAACT
CATCACCGCTCACGTTCAGTATCTCCTCATCGCGGCAATGATCAGGGAAAGCCGCGTTCACGTTTACCAA
ATGTGCCATTACAGAGGAGTTTAGATGAAATTCATCCAACAAGAAGGTCACGTTCTCCAACCAGACACCA
TGATGCCTCCCGAAGTCCAGTTGATCATAGAACCAGAGATGTGGATAGTCAGTATTTATCAGAACAAGAC
AGTGAGCTTCTTATGCTGCCCAGAGCAAAACGAGGACGAAGTGCAGAATGCCTACATACTACCAGTGAAC
TGCAGCCCTTTCTTGACAGGGCTAGGAGTGCTAGTACCAACTGCTTGAGACCAGATACTAGTTTGCATTC
ACCAGAACGAGAAAGGCACTCCAGAAAGTCTGAAAGATCTAGCATCCAAAAACAGACTAGGAAAGGCACT
GCCTCTGATGCAGAAAGAATGCACCGACAGAGAAGTCCAACACAATCTCCTCCAGCAGACACATCGTTCA
GCAGTCGCAGGGGAAGACAGCTCCCACAAGTGCCAGTGAGAAGCGGCAGTATAGAACAAGCAAGCTTAGT
AGTGGAGGAGCGAACAAGACAGATGAAAATGAAAGTGCATCGATTTAAGCAGACAACAGGGTCTGGTTCT
AGTCAAGAACTTGATCGCGAGCAATATTCCAAGTATAACATACATAAAGATCAGTACAGAAGCTGTGATA
ACGTCTCTGCCAAATCATCAGATAGTGATGTCAGTGATGTTTCCGCCATTTCCCGAACCAGCAGTGCCTC
ACGCCTCAGCAGCACAAGCTTTATGTCAGAGCAATCTGAGCGCCCCAGGGGTAGAATCAGTTCATTTACC
CCCAAAATGCAAGGCAGACGGATGGGGACTTCAGGAAGATCCATCATGAAGAGCACCAGTGTCAGTGGAG
AGATGTACACACTGGAGCATAATGACGGCAGCCAGTCAGACACAGCTGTGGGTACAGTTGGAGCAGGTGG
AAAGAAACGGAGATCCAGCCTTAGTGCCAAAGTGGTTGCCATAGTGTCTCGAAGGAGTAGAAGCACATCC
CAGCTTAGTCAAACAGAGTCGGGCCACAAAAAGTTAAAAAGTACCATCCAGAGAAGCACAGAAACAGGCA
TGGCAGCTGAAATGAGAAAGATGGTAAGGCAGCCGAGCCGAGAGTCTACTGATGGCAGCATCAACAGTTA
CAGCTCTGAGGGCAATTTAATATTTCCTGGAGTGCGACTGGGAGCTGACAGTCAATTCAGTGATTTTCTT
GATGGATTGGGACCAGCCCAGCTTGTTGGCCGCCAAACCCTTGCCACCCCTGCAATGGGTGATATACAAA
TAGGAATGGAGGACAAAAAGGGCCAATTAGAAGTGGAAGTCATTAGAGCACGAAGCCTCACACAAAAGCC
TGGTTCCAAATCTACACCTGCTCCATATGTCAAAGTATATCTTTTGGAAAATGGGGCCTGTATAGCCAAG
AAGAAGACAAGAATTGCACGAAAAACCCTTGATCCTTTGTATCAGCAGTCTCTGGTTTTTGATGAAAGTC
CACAGGGTAAAGTTCTTCAGGTGATTGTCTGGGGAGACTATGGCAGAATGGACCACAAATGCTTTATGGG
TGTGGCTCAGATCTTGTTGGAAGAACTCGACCTGTCCAGCATGGTGATCGGATGGTACAAATTGTTCCCA
CCGTCCTCACTGGTGGATCCCACACTCACTCCCCTCACCCGGCGGGCTTCCCAGTCATCTCTGGAAAGTT
CAACTGGGCCTCCCTGTATTCGATCATAG

Translation (1012 aa):
MCAPGIHVSSEGWEEVRSVDSEEGTIEARRAVAGDLDYYWLDPATWHSRETSPISSHPVTWQPSKEGDRL
IGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPG
ATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPESSHPPLESSSSSFESQKMERPSISVISPTSPGALK
DAPQVLPGQLSVKLWYDKVGHQLIVNVLQATDLPARVDGRPRNPYVKMYFLPDRSDKSKRRTKTVKKILE
PKWNQTFVYSHVHRRDFRERMLEITVWDQPRVQEEESEFLGEILIELETALLDDEPHWYKLQTHDESSLP
LPQPSPFMPRRHIHGESSSKKLQRSQRISDSDISDYEVDDGIGVVPPGYRSSARESKSTTLTVPEQQRTT
HHRSRSVSPHRGNDQGKPRSRLPNVPLQRSLDEIHPTRRSRSPTRHHDASRSPVDHRTRDVDSQYLSEQD
SELLMLPRAKRGRSAECLHTTSELQPFLDRARSASTNCLRPDTSLHSPERERHSRKSERSSIQKQTRKGT
ASDAERMHRQRSPTQSPPADTSFSSRRGRQLPQVPVRSGSIEQASLVVEERTRQMKMKVHRFKQTTGSGS
SQELDREQYSKYNIHKDQYRSCDNVSAKSSDSDVSDVSAISRTSSASRLSSTSFMSEQSERPRGRISSFT
PKMQGRRMGTSGRSIMKSTSVSGEMYTLEHNDGSQSDTAVGTVGAGGKKRRSSLSAKVVAIVSRRSRSTS
QLSQTESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRLGADSQFSDFL
DGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAK
KKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFP
PSSLVDPTLTPLTRRASQSSLESSTGPPCIRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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