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Report for CCDS55021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55021.1 Public Homo sapiens 6 EFHC1 24 110 108 CCDS HistoryNCBI Gene:114327Re-query CCDS DB by CCDS ID:55021.1Re-query CCDS DB by GeneID:114327See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55021.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538167.2 ENSP00000444521.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538167.2Link to Ensembl Protein Viewer:ENSP00000444521.1Re-query CCDS DB by Nucleotide ID:ENST00000538167Re-query CCDS DB by Protein ID:ENSP00000444521
Original member Current member EBI ENST00000636954.1 ENSP00000489966.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000636954.1Link to Ensembl Protein Viewer:ENSP00000489966.1Re-query CCDS DB by Nucleotide ID:ENST00000636954Re-query CCDS DB by Protein ID:ENSP00000489966
Original member Current member EBI ENST00000636489.1 ENSP00000489998.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000636489.1Link to Ensembl Protein Viewer:ENSP00000489998.1Re-query CCDS DB by Nucleotide ID:ENST00000636489Re-query CCDS DB by Protein ID:ENSP00000489998
Original member Current member NCBI NM_001172420.2 NP_001165891.1 Accepted alive Link to Nucleotide Sequence:NM_001172420.2Link to Protein Sequence:NP_001165891.1Re-query CCDS DB by Nucleotide ID:NM_001172420Re-query CCDS DB by Protein ID:NP_001165891Link to BLAST:NP_001165891.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165891.1 621 Q5JVL4-3 621 100% 0 0

Chromosomal Locations for CCDS 55021.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 52423809 52423814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52423946 52424167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52438304 52438591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52452688 52452837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52454095 52454287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52464895 52465115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52469333 52469473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52479037 52479250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52479640 52479787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52490140 52490350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52492270 52492341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1866 nt):
ATGTTGAAAACAGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAACGGCTATGCAATTGTTCGACGTC
CAACAGTTGGGATAGGCGGAGACCGGCTCCAGTTCAACCAGCTGTCCCAGGCTGAGCTGGATGAGTTGGC
CAGTAAGGCACCAGTCTTAACTTATGGCCAACCTAAACAAGCCCCACCTGCGGATTTTATTCCTGCGCAT
GTGGCCTTTGACAAAAAGGTACTGAAATTTGATGCCTATTTCCAAGAAGATGTTCCTATGTCAACTGAGG
AACAGTATAGGATCCGTCAGGTGAACATTTACTATTATCTAGAAGATGACAGCATGTCTGTCATAGAGCC
TGTTGTAGAAAATTCTGGAATCCTTCAAGGCAAGTTAATAAAACGCCAGCGGCTAGCCAAGAATGACCGG
GGTGACCATTACCATTGGAAAGACCTAAATCGAGGAATAAACATCACAATTTATGGCAAAACTTTCCGCG
TTGTTGACTGTGACCAATTCACACAGGTATTTTTAGAAAGCCAAGGAATTGAGTTAAATCCACCAGAGAA
GATGGCTCTTGATCCTTACACTGAACTCCGAAAACAGCCTCTTCGTAAGTATGTCACCCCATCAGACTTT
GATCAACTCAAGCAATTTCTCACCTTTGACAAACAGGTCCTTCGATTCTATGCAATCTGGGATGATACAG
ACAGCATGTATGGTGAATGTCGGACCTACATCATTCATTACTATCTTATGGATGATACGGTGGAAATTCG
AGAGGTCCACGAACGGAATGATGGGAGAGATCCTTTCCCACTCCTAATGAACCGCCAGCGTGTGCCCAAA
GTTTTGGTGGAAAATGCAAAGAACTTCCCTCAGTGTGTGCTAGAAATCTCTGACCAAGAAGTGTTGGAAT
GGTATACTGCTAAAGACTTCATTGTTGGGAAGTCACTCACTATCCTTGGGAGAACTTTCTTCATTTATGA
TTGTGATCCATTTACTCGACGGTATTACAAAGAGAAGTTTGGAATCACTGATTTACCACGTATTGATGTG
AGCAAGCGGGAACCACCTCCAGTAAAACAGGAGTTGCCTCCTTATAACGGTTTTGGACTAGTGGAAGATT
CTGCTCAGAATTGTTTTGCTCTCATTCCAAAAGCTCCAAAAAAAGACGTTATTAAAATGCTGGTGAATGA
TAACAAGGTGCTTCGTTATTTGGCTGTACTGGAATCCCCCATCCCAGAAGACAAAGACCGCAGATTTGTC
TTCTCTTACTTTCTAGCTACCGACATGATCAGTATCTTTGAGCCTCCTGTTCGCAATTCTGGTATCATTG
GGGGCAAGTACCTTGGCAGGACTAAAGTTGTTAAACCATACTCTACAGTGGACAACCCTGTCTACTATGG
CCCCAGTGACTTCTTCATTGGTGCTGTGATTGAAGTGTTTGGTCACCGGTTCATCATCCTTGATACAGAC
GAGTATGTTTTGAAATACATGGAGAGCAACGCTGCCCAGTATTCACCAGAAGCACTCGCGTCAATTCAGA
ACCATGTCCGAAAGCGAGAAGCGCCTGCTCCAGAAGCAGAAAGCAAGCAAACTGAAAAGGATCCAGGCGT
GCAGGAATTGGAAGCATTAATAGACACAATTCAGAAGCAACTGAAAGATCACTCATGCAAAGACAACATT
CGTGAGGCATTTCAAATTTATGACAAGGAAGCTTCAGGATATGTGGACAGAGACATGTTCTTTAAAATCT
GTGAATCGCTTAACGTCCCAGTGGATGACTCCTTGGTTAAGGAGTTAATCAGGATGTGCTCTCATGGAGA
AGGCAAAATTAACTACTATAACTTTGTTCGTGCTTTCTCAAACTGA

Translation (621 aa):
MLKTAFHRSQTLSYRNGYAIVRRPTVGIGGDRLQFNQLSQAELDELASKAPVLTYGQPKQAPPADFIPAH
VAFDKKVLKFDAYFQEDVPMSTEEQYRIRQVNIYYYLEDDSMSVIEPVVENSGILQGKLIKRQRLAKNDR
GDHYHWKDLNRGINITIYGKTFRVVDCDQFTQVFLESQGIELNPPEKMALDPYTELRKQPLRKYVTPSDF
DQLKQFLTFDKQVLRFYAIWDDTDSMYGECRTYIIHYYLMDDTVEIREVHERNDGRDPFPLLMNRQRVPK
VLVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKSLTILGRTFFIYDCDPFTRRYYKEKFGITDLPRIDV
SKREPPPVKQELPPYNGFGLVEDSAQNCFALIPKAPKKDVIKMLVNDNKVLRYLAVLESPIPEDKDRRFV
FSYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPYSTVDNPVYYGPSDFFIGAVIEVFGHRFIILDTD
EYVLKYMESNAAQYSPEALASIQNHVRKREAPAPEAESKQTEKDPGVQELEALIDTIQKQLKDHSCKDNI
REAFQIYDKEASGYVDRDMFFKICESLNVPVDDSLVKELIRMCSHGEGKINYYNFVRAFSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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