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Report for CCDS54970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54970.1 Public Homo sapiens 6 KIAA0319 24 110 108 CCDS HistoryNCBI Gene:9856Re-query CCDS DB by CCDS ID:54970.1Re-query CCDS DB by GeneID:9856See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54970.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535378.5 ENSP00000442403.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535378.5Link to Ensembl Protein Viewer:ENSP00000442403.1Re-query CCDS DB by Nucleotide ID:ENST00000535378Re-query CCDS DB by Protein ID:ENSP00000442403
Original member Current member NCBI NM_001168374.2 NP_001161846.1 Accepted alive Link to Nucleotide Sequence:NM_001168374.2Link to Protein Sequence:NP_001161846.1Re-query CCDS DB by Nucleotide ID:NM_001168374Re-query CCDS DB by Protein ID:NP_001161846Link to BLAST:NP_001161846.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161846.1 1063 Q5VV43-2 1063 100% 0 0

Chromosomal Locations for CCDS 54970.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 24547165 24547343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24551434 24551525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24554541 24554631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24556607 24556729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24559013 24559155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24563359 24563518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24564202 24564340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24566597 24566748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24568781 24568929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24569903 24570035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24572575 24572698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24576368 24576596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24578110 24578242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24579858 24579950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24580926 24581013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24582249 24582346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24583604 24583702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24588593 24588785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24595873 24596618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24600619 24600646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3192 nt):
ATGACTAGACTGGGCTGGCCGAGCCCATGTTGTGCCCGTAAGCAGTGCAGCGAGGGGAGGACATATTCCA
ATGCAGTCATTTCACCTAACTTGGAAACCACCAGAATCATGCGGGTGTCTCACACCTTCCCTGTCGTAGA
CTGCACGGCCGCTTGCTGTGACCTGTCCAGCTGTGACCTGGCCTGGTGGTTCGAGGGCCGCTGCTACCTG
GTGAGCTGCCCCCACAAAGAGAACTGTGAGCCCAAGAAGATGGGCCCCATCAGGTCTTATCTCACTTTTG
TGCTCCGGCCTGTTCAGAGGCCTGCACAGCTGCTGGACTATGGGGACATGATGCTGAACAGGGGCTCCCC
CTCGGGGATCTGGGGGGACTCACCTGAGGATATCAGAAAGGACTTGACCTTTCTAGGCAAAGATTGGGGC
CTAGAGGAGATGTCTGAGTACTCAGATGACTACCGGGAGCTGGAGAAGGACCTCTTGCAACCCAGTGGCA
AGCAGGAGCCCAGAGGGAGTGCCGAGTACACGGACTGGGGCCTACTGCCGGGCAGCGAGGGGGCCTTCAA
CTCCTCTGTTGGAGACAGTCCTGCGGTGCCAGCGGAGACGCAGCAGGACCCTGAGCTCCATTACCTGAAT
GAGTCGGCTTCAACCCCTGCCCCAAAACTCCCTGAGAGAAGTGTGTTGCTTCCCTTGCCGACTACTCCAT
CTTCAGGAGAGGTGTTGGAGAAAGAAAAGGCTTCTCAGCTCCAGGAACAATCCAGCAACAGCTCTGGAAA
AGAGGTTCTAATGCCTTCCCATAGTCTTCCTCCGGCAAGCCTGGAGCTCAGCTCAGTCACCGTGGAGAAA
AGCCCAGTGCTCACAGTCACCCCGGGGAGTACAGAGCACAGCATCCCAACACCTCCCACTAGCGCAGCCC
CCTCTGAGTCCACCCCATCTGAGCTACCCATATCTCCTACCACTGCTCCCAGGACAGTGAAAGAACTTAC
GGTATCGGCTGGAGATAACCTAATTATAACTTTACCCGACAATGAAGTTGAACTGAAGGCCTTTGTTGCG
CCAGCGCCACCTGTAGAAACAACCTACAACTATGAATGGAATTTAATAAGCCACCCCACAGACTACCAAG
GTGAAATAAAACAAGGACACAAGCAAACTCTTAACCTCTCTCAATTGTCCGTCGGACTTTATGTCTTCAA
AGTCACTGTTTCTAGTGAAAACGCCTTTGGAGAAGGATTTGTCAATGTCACTGTTAAGCCTGCCAGAAGA
GTCAACCTGCCACCTGTAGCAGTTGTTTCTCCCCAACTGCAAGAGCTCACTTTGCCTTTGACGTCAGCCC
TCATTGATGGCAGCCAAAGTACAGATGATACTGAAATAGTGAGTTATCATTGGGAAGAAATAAACGGGCC
CTTCATAGAAGAGAAGACTTCAGTTGACTCTCCCGTCTTACGCTTGTCTAACCTTGATCCTGGTAACTAT
AGTTTCAGGTTGACTGTTACAGACTCGGACGGAGCCACTAACTCTACAACTGCAGCCCTAATAGTGAACA
ATGCTGTGGACTACCCACCAGTTGCTAATGCAGGACCAAATCACACCATAACTTTGCCCCAAAACTCCAT
CACTTTGAATGGAAACCAGAGCAGTGACGATCACCAGATTGTCCTCTATGAGTGGTCCCTGGGTCCTGGG
AGTGAGGGCAAACATGTGGTCATGCAGGGAGTACAGACGCCATACCTTCATTTATCTGCAATGCAGGAAG
GAGATTATACATTTCAGCTGAAGGTGACAGATTCTTCAAGGCAACAGTCTACTGCTGTGGTGACTGTGAT
TGTCCAGCCTGAAAACAATAGACCTCCAGTGGCTGTGGCCGGCCCTGATAAAGAGCTGATCTTCCCAGTG
GAAAGTGCTACCCTGGATGGGAGCAGCAGCAGCGATGACCACGGCATTGTCTTCTACCACTGGGAGCACG
TCAGAGGCCCCAGTGCAGTGGAGATGGAAAATATTGACAAAGCAATAGCCACTGTGACTGGTCTCCAGGT
GGGGACCTACCACTTCCGTTTGACAGTGAAAGACCAGCAGGGACTGAGCAGCACGTCCACCCTCACTGTG
GCTGTGAAGAAGGAAAATAATAGTCCTCCCAGAGCCCGGGCTGGTGGCAGACATGTTCTTGTGCTTCCCA
ATAATTCCATTACTTTGGATGGTTCAAGGTCTACTGATGACCAAAGAATTGTGTCCTATCTGTGGATCCG
GGATGGCCAGAGTCCAGCAGCTGGAGATGTCATCGATGGCTCTGACCACAGTGTGGCTCTGCAGCTTACG
AATCTGGTGGAGGGGGTGTACACTTTCCACTTGCGAGTCACCGACAGTCAGGGGGCCTCGGACACAGACA
CTGCCACTGTGGAAGTGCAGCCAGACCCTAGGAAGAGTGGCCTGGTGGAGCTGACCCTGCAGGTTGGTGT
TGGGCAGCTGACAGAGCAGCGGAAGGACACCCTTGTGAGGCAGCTGGCTGTGCTGCTGAACGTGCTGGAC
TCGGACATTAAGGTCCAGAAGATTCGGGCCCACTCGGATCTCAGCACCGTGATTGTGTTTTATGTACAGA
GCAGGCCGCCTTTCAAGGTTCTCAAAGCTGCTGAAGTGGCCCGAAATCTGCACATGCGGCTCTCAAAGGA
GAAGGCTGACTTCTTGCTTTTCAAGGTCTTGAGGGTTGATACAGCAGGTTGCCTTCTGAAGTGTTCTGGC
CATGGTCACTGCGACCCCCTCACAAAGCGCTGCATTTGCTCTCACTTATGGATGGAGAACCTTATACAGC
GTTATATCTGGGATGGAGAGAGCAACTGTGAGTGGAGTATATTCTATGTGACAGTGTTGGCTTTTACTCT
TATTGTGCTAACAGGAGGTTTCACTTGGCTTTGCATCTGCTGCTGCAAAAGACAAAAAAGGACTAAAATC
AGGAAAAAAACAAAGTACACCATCCTGGATAACATGGATGAACAGGAAAGAATGGAACTGAGGCCCAAAT
ATGGTATCAAGCACCGAAGCACAGAGCACAACTCCAGCCTGATGGTATCCGAGTCTGAGTTTGACAGTGA
CCAGGACACAATCTTCAGCCGAGAAAAGATGGAGAGAGGGAATCCAAAGGTTTCCATGAATGGTTCCATC
AGAAATGGAGCTTCCTTCAGTTATTGCTCAAAGGACAGATAA

Translation (1063 aa):
MTRLGWPSPCCARKQCSEGRTYSNAVISPNLETTRIMRVSHTFPVVDCTAACCDLSSCDLAWWFEGRCYL
VSCPHKENCEPKKMGPIRSYLTFVLRPVQRPAQLLDYGDMMLNRGSPSGIWGDSPEDIRKDLTFLGKDWG
LEEMSEYSDDYRELEKDLLQPSGKQEPRGSAEYTDWGLLPGSEGAFNSSVGDSPAVPAETQQDPELHYLN
ESASTPAPKLPERSVLLPLPTTPSSGEVLEKEKASQLQEQSSNSSGKEVLMPSHSLPPASLELSSVTVEK
SPVLTVTPGSTEHSIPTPPTSAAPSESTPSELPISPTTAPRTVKELTVSAGDNLIITLPDNEVELKAFVA
PAPPVETTYNYEWNLISHPTDYQGEIKQGHKQTLNLSQLSVGLYVFKVTVSSENAFGEGFVNVTVKPARR
VNLPPVAVVSPQLQELTLPLTSALIDGSQSTDDTEIVSYHWEEINGPFIEEKTSVDSPVLRLSNLDPGNY
SFRLTVTDSDGATNSTTAALIVNNAVDYPPVANAGPNHTITLPQNSITLNGNQSSDDHQIVLYEWSLGPG
SEGKHVVMQGVQTPYLHLSAMQEGDYTFQLKVTDSSRQQSTAVVTVIVQPENNRPPVAVAGPDKELIFPV
ESATLDGSSSSDDHGIVFYHWEHVRGPSAVEMENIDKAIATVTGLQVGTYHFRLTVKDQQGLSSTSTLTV
AVKKENNSPPRARAGGRHVLVLPNNSITLDGSRSTDDQRIVSYLWIRDGQSPAAGDVIDGSDHSVALQLT
NLVEGVYTFHLRVTDSQGASDTDTATVEVQPDPRKSGLVELTLQVGVGQLTEQRKDTLVRQLAVLLNVLD
SDIKVQKIRAHSDLSTVIVFYVQSRPPFKVLKAAEVARNLHMRLSKEKADFLLFKVLRVDTAGCLLKCSG
HGHCDPLTKRCICSHLWMENLIQRYIWDGESNCEWSIFYVTVLAFTLIVLTGGFTWLCICCCKRQKRTKI
RKKTKYTILDNMDEQERMELRPKYGIKHRSTEHNSSLMVSESEFDSDQDTIFSREKMERGNPKVSMNGSI
RNGASFSYCSKDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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