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Report for CCDS54962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54962.1 Public Homo sapiens 6 LYRM4 24 110 108 CCDS HistoryNCBI Gene:57128Re-query CCDS DB by CCDS ID:54962.1Re-query CCDS DB by GeneID:57128See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54962.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000500576.4 ENSP00000443900.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000500576.4Link to Ensembl Protein Viewer:ENSP00000443900.3Re-query CCDS DB by Nucleotide ID:ENST00000500576Re-query CCDS DB by Protein ID:ENSP00000443900
Original member Current member NCBI NM_001164840.3 NP_001158312.1 Accepted alive Link to Nucleotide Sequence:NM_001164840.3Link to Protein Sequence:NP_001158312.1Re-query CCDS DB by Nucleotide ID:NM_001164840Re-query CCDS DB by Protein ID:NP_001158312Link to BLAST:NP_001158312.1

Chromosomal Locations for CCDS 54962.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 5186795 5186980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5216618 5216738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5260648 5260733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (393 nt):
ATGGCAGCCTCCAGTCGCGCACAAGTGTTATCTCTGTACCGGGCGATGCTGAGAGAGAGCAAGCGTTTCA
GCGCCTACAATTACAGAACATATGCTGTCAGGAGGATAAGAGATGCCTTCAGAGAAAATAAAAATGTAAA
GGATCCTGTAGAAATTCAAACCCTAGTGAATAAAGCCAAGAGAGACCTTGGAGTAATTCGTCGACAGATG
GACTCTCACTCTGTCGCCCAGGCTGGAGTGCATTGGAACGATCTCAGCTCACTACAACCTCTGCCTCCCT
GGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTATAGGCGCACGCCACCACGCCTGGC
TAATTTTTGTATTCTTAGTAGAGATGTGATTTCACTGTATTAG

Translation (130 aa):
MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRDLGVIRRQM
DSHSVAQAGVHWNDLSSLQPLPPWFKQFSCLSLPSSWDYRRTPPRLANFCILSRDVISLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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