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Report for CCDS54954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54954.1 Public Homo sapiens 5 FAM193B 24 110 108 CCDS HistoryNCBI Gene:54540Re-query CCDS DB by CCDS ID:54954.1Re-query CCDS DB by GeneID:54540See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 54954.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000514747.6 ENSP00000422131.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000514747.6Link to Ensembl Protein Viewer:ENSP00000422131.1Re-query CCDS DB by Nucleotide ID:ENST00000514747Re-query CCDS DB by Protein ID:ENSP00000422131
Original member Current member NCBI NM_001190946.3 NP_001177875.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001190946.3Link to Protein Sequence:NP_001177875.1Re-query CCDS DB by Nucleotide ID:NM_001190946Re-query CCDS DB by Protein ID:NP_001177875Link to BLAST:NP_001177875.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177875.1 822 Q96PV7-3 822 100% 0 0

Chromosomal Locations for CCDS 54954.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 177521975 177522071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177523957 177524032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177524185 177525205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177532443 177532641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177536358 177536745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177537873 177538107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177538905 177539147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177554249 177554458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2469 nt):
ATGACGCGGAGGCGGAGCAGGCCGAGCGGCGGTGCGGGCAGGCGCGAGCGGGCTCGGGCCGCGGGGCCGC
AGAAGCCCCAGGCGCCCGAGCCCCCGCCGCCGCCAAGCCTGGAGGCGGGAGCGGGTGCAGGCCCTCCGGA
GGCGCCGGCGGAGCCCGACCACGACGGCCCCAGGGAGGATGACGAACCCAACCTGGTGCCCGGCCCGCAG
GTCCCCCCCGCCTCCAGCCAGCCTGTGCAGACTTGCTGCCTGCTGTGTCACCGGGAACGCAAAGGCTGGG
AAGAAGGCCCTTCTCAAAATGGACTGGTGTTGCAGGGTGAGAAGCTGCCCCCTGACTTCATGCCAAAGCT
CGTCAAGAATCTCCTAGGCGAGATGCCTCTGTGGGTCTGCCAGAGTTGCCGAAAGAGCATGGAGGAAGAT
GAAAGGCAGACAGGTCGAGAACATGCAGTGGCGATCTCCTTGTCACACACATCCTGCAAATCACAGTCTT
GTGGAGATGACTCTCATTCGTCCTCGTCTTCCTCCTCATCATCCTCATCCTCGTCCTCCTCTTCCTGCCC
TGGGAACTCGGGAGACTGGGATCCTAGCTCGTTCCTGTCGGCACATAAGCTCTCGGGCCTCTGGAATTCC
CCACATTCCAGTGGGGCCATGCCAGGCAGCTCTCTTGGGAGTCCTCCTACCATCCCCGGTGAGGCTTTCC
CCGTCTCGGAGCACCACCAGCACTCAGACCTCACTGCTCCCCCTAACAGCCCCACCGGCCACCACCCGCA
GCCAGCATCTCTAATCCCGTCTCACCCCAGCTCCTTTGGCTCCCCACCCCACCCACACCTGCTGCCCACC
ACCCCGGCAGCACCTTTCCCTGCCCAGGCTTCAGAGTGCCCTGTTGCTGCTGCCACTGCCCCCCACACTC
CAGGGCCATGTCAGAGCTCCCATCTACCCTCCACCAGCATGCCGCTCCTGAAGATGCCCCCACCATTCTC
GGGGTGCAGCCACCCCTGCAGCGGGCACTGTGGTGGGCACTGCAGTGGGCCTCTCCTCCCACCCCCGAGC
TCTCAGCCACTCCCTAGCACTCACAGGGATCCCGGGTGCAAGGGGCACAAGTTTGCACACAGTGGCCTGG
CTTGCCAGCTGCCCCAGCCCTGCGAGGCAGATGAGGGGCTGGGTGAGGAAGAGGATAGCAGCTCTGAGCG
AAGCTCCTGCACCTCATCCTCCACCCACCAGAGAGATGGGAAGTTCTGTGACTGCTGCTACTGTGAGTTC
TTCGGCCACAATGCGGAAAAGGAGAAGGCCCAGTTGGCAGCAGAAGCTCTAAAGCAGGCAAATCGTGTTT
CTGGAAGCCGGGAGCCAAGGCCTGCCAGGGAGAGGCTCTTGGAGTGGCCCGACCGGGAACTGGATCGGGT
CAACAGCTTCCTGAGCAGCCGTCTGCAGGAGATCAAAAACACTGTCAAAGACTCCATCCGTGCCAGCTTC
AGTGTGTGTGAGCTCAGCATGGACAGCAATGGCTTCTCTAAGGAGGGGGCTGCTGAGCCTGAGCCTCAGA
GTCTACCCCCCTCAAACCTCAGTGGCTCCTCAGAGCAGCAGCCTGACATCAACCTTGACCTGTCCCCTTT
GACTTTGGGCTCCCCTCAGAACCACACGTTACAAGCTCCAGGCGAGCCAGCCCCACCATGGGCAGAAATG
AGAGGCCCCCACCCACCATGGACAGAGGTGAGGGGGCCCCCTCCCGGTATCGTCCCCGAGAACGGGCTCG
TGAGGAGACTCAACACCGTGCCCAACCTATCCCGGGTGATCTGGGTCAAGACACCCAAGCCGGGCTACCC
CAGCTCCGAGGAGCCAAGCTCAAAGGAAGTTCCCAGTTGCAAGCAGGAGCTGCCTGAGCCTGTGTCCTCA
GGTGGGAAGCCACAGAAGGGCAAGAGGCAGGGCAGTCAGGCCAAGAAGAGCGAGGCAAGCCCAGCCCCCC
GGCCCCCAGCCAGCCTAGAGGTTCCCAGTGCCAAGGGCCAGGTCGCTGGCCCCAAGCAGCCAGGCAGGGT
CCTAGAGCTTCCCAAAGTAGGCAGCTGTGCTGAGGCTGGAGAGGGGAGCCGGGGGAGCCGGCCAGGACCA
GGTTGGGCTGGCAGTCCCAAAACTGAGAAGGAGAAGGGCAGCTCCTGGCGAAACTGGCCAGGCGAGGCCA
AGGCACGGCCTCAGGAGCAGGAGTCTGTGCAGCCCTCAGGCCCAGCAAGGCCACAGAGCTTGCCCCAGGG
CAAGGGCCGCAGCCGCCGGAGCCGCAACAAGCAGGAGAAGCCAGCCTCCTCCTTGGACGATGTGTTCCTG
CCCAAGGACATGGACGGGGTGGAGATGGATGAGACTGACCGAGAGGTGGAGTACTTTAAGAGGTTCTGTT
TGGATTCTGCAAAGCAGACTCGTCAGAAAGTTGCTGTGAACTGGACCAACTTCAGCCTCAAGAAAACCAC
TCCTAGCACAGCTCAGTGA

Translation (822 aa):
MTRRRSRPSGGAGRRERARAAGPQKPQAPEPPPPPSLEAGAGAGPPEAPAEPDHDGPREDDEPNLVPGPQ
VPPASSQPVQTCCLLCHRERKGWEEGPSQNGLVLQGEKLPPDFMPKLVKNLLGEMPLWVCQSCRKSMEED
ERQTGREHAVAISLSHTSCKSQSCGDDSHSSSSSSSSSSSSSSSSCPGNSGDWDPSSFLSAHKLSGLWNS
PHSSGAMPGSSLGSPPTIPGEAFPVSEHHQHSDLTAPPNSPTGHHPQPASLIPSHPSSFGSPPHPHLLPT
TPAAPFPAQASECPVAAATAPHTPGPCQSSHLPSTSMPLLKMPPPFSGCSHPCSGHCGGHCSGPLLPPPS
SQPLPSTHRDPGCKGHKFAHSGLACQLPQPCEADEGLGEEEDSSSERSSCTSSSTHQRDGKFCDCCYCEF
FGHNAEKEKAQLAAEALKQANRVSGSREPRPARERLLEWPDRELDRVNSFLSSRLQEIKNTVKDSIRASF
SVCELSMDSNGFSKEGAAEPEPQSLPPSNLSGSSEQQPDINLDLSPLTLGSPQNHTLQAPGEPAPPWAEM
RGPHPPWTEVRGPPPGIVPENGLVRRLNTVPNLSRVIWVKTPKPGYPSSEEPSSKEVPSCKQELPEPVSS
GGKPQKGKRQGSQAKKSEASPAPRPPASLEVPSAKGQVAGPKQPGRVLELPKVGSCAEAGEGSRGSRPGP
GWAGSPKTEKEKGSSWRNWPGEAKARPQEQESVQPSGPARPQSLPQGKGRSRRSRNKQEKPASSLDDVFL
PKDMDGVEMDETDREVEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTTPSTAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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