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Report for CCDS54928.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54928.1 Public Homo sapiens 5 PCDHGB4 24 110 108 CCDS HistoryNCBI Gene:8641Re-query CCDS DB by CCDS ID:54928.1Re-query CCDS DB by GeneID:8641See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54928.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000519479.2 ENSP00000428288.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000519479.2Link to Ensembl Protein Viewer:ENSP00000428288.1Re-query CCDS DB by Nucleotide ID:ENST00000519479Re-query CCDS DB by Protein ID:ENSP00000428288
Original member Current member NCBI NM_003736.4 NP_003727.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003736.4Link to Protein Sequence:NP_003727.1Re-query CCDS DB by Nucleotide ID:NM_003736Re-query CCDS DB by Protein ID:NP_003727Link to BLAST:NP_003727.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003727.1 923 Q9UN71-1 923 100% 0 0

Chromosomal Locations for CCDS 54928.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141387885 141390281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2772 nt):
ATGGGGAGCGGCGCCGGGGAGCTGGGCCGGGCTGAGAGGCTGCCAGTGCTCTTTCTCTTCCTGCTGTCTT
TGTTCTGCCCGGCGCTCTGTGAGCAGATCCGCTACAGGATTCCCGAGGAAATGCCCAAGGGCTCCGTAGT
GGGGAACCTCGCCACGGACCTGGGGTTCAGCGTCCAGGAGTTACCGACTCGAAAACTGCGCGTCAGTTCG
GAGAAGCCTTACTTCACCGTGAGCGCAGAGAGCGGGGAGTTGCTTGTGAGCAGCAGGCTAGACAGGGAGG
AGATATGCGGGAAGAAGCCAGCTTGTGCTCTGGAATTTGAGGCTGTTGCTGAAAATCCACTGAACTTTTA
TCACGTGAATGTGGAGATCGAGGACATTAATGACCACACGCCAAAATTCACGCAAAATTCCTTTGAGCTG
CAAATAAGTGAGTCTGCACAGCCTGGCACACGATTTATATTAGGATCTGCCCATGATGCGGATATTGGTA
GCAACACACTGCAGAATTACCAACTCAGTCCCAGTGATCATTTCTCACTGATAAATAAAGAGAAATCAGA
TGGCAGTAAATACCCTGAGATGGTATTGAAGACACCTTTGGACAGAGAAAAGCAGAAATCCTACCACTTG
ACTTTGACTGCCTTGGACTTTGGAGCTCCACCCCTAAGCAGCACTGCACAGATACACGTTCTAGTGACTG
ATGCCAATGATAATGCTCCAGTGTTCAGTCAAGACGTATACAGGGTGAGCCTTTCAGAAAACGTGTACCC
GGGGACCACGGTGCTACAGGTGACTGCCACGGACCAGGATGAGGGTGTCAATGCCGAGATTACTTTCTCT
TTCAGTGAAGCTAGCCAGATCACCCAATTTGACCTGAACTCTAACACCGGGGAAATTACTGTTTTAAATA
CATTAGATTTTGAAGAAGTCAAAGAATATTCCATAGTTTTGGAAGCAAGGGACGGTGGAGGAATGATTGC
GCAATGCACAGTGGAGGTAGAAGTCATAGATGAAAATGACAACGCCCCAGAAGTGATATTCCAGTCTCTA
CCCAACCTAATTATGGAGGACGCCGAGCTGGGAACACATATTGCTTTGCTCAAAGTCCGTGACAAGGATT
CCAGACACAATGGAGAAGTGACTTGTAAATTGGAAGGTGATGTTCCATTTAAAATATTAACTTCTTCAAG
AAACACGTATAAATTAGTGACAGATGCTGTTCTAGACCGCGAGCAGAATCCAGAGTACAATATAACCGTT
ACGGCAACAGATCGGGGCAAGCCTCCCCTCTCCTCCAGTTCCAGCATCACCCTGCACATTGGTGATGTAA
ATGACAACGCTCCGGTTTTCTCACAGTCTTCCTATATAGTCCACGTGGCCGAGAACAACCCGCCTGGAGC
CTCTATTTCACAAGTCAGGGCTTCTGATCCGGACTTGGGGCCCAACGGCCAAGTCTCTTACTGCATCATG
GCCAGTGACCTGGAGCAGCGGGAGCTGTCATCCTACGTGTCCATAAGCGCGGAGAGCGGGGTGGTGTTCG
CGCAGCGCGCCTTCGACCACGAGCAGCTGCGCGCCTTCGAACTCACACTGCAGGCCCGCGACCAGGGCTC
GCCAGCGCTCAGCGCGAACGTGAGCCTGCGCGTGTTAGTGGACGACCGCAACGACAATGCGCCACGGGTG
CTGTACCCCGCGCTGGGTCCCGACGGCTCTGCGCTCTTCGATATGGTGCCGCACGCTGCAGAGCCTGGCT
ACTTGGTGACCAAGGTAGTGGCGGTGGACGCAGACTCAGGACACAACGCCTGGCTGTCCTACCACGTGCT
GCAGGCTAGCGAGCCCGGGCTCTTCAGCCTGGGGCTGCGCACGGGCGAAGTGCGCACAGCGCGTGCCTTA
GGCGACAGGGACGCCGTCCGCCAGCGCCTTCTGGTCGCCGTGCGTGACGGTGGACAGCCACCACTCTCGG
CCACTGCCACGTTGCACCTGGTCTTCGCCGACAGCTTGCAGGAGGTGCTGCCGGATATCACTGACCGCCC
CGACCCCTCTGACCTCCAGGCTGAGCTGCAGTTTTACCTAGTGGTGGCCTTGGCCTTGATCTCAGTGCTC
TTCCTCGTGGCCATGATTCTGGCCATTGCCTTGCGCCTGCGACGCTCCTCCAGCCCCGCCTCCTGGAGCT
GCTTCCAGCCTGGTCTCTGTGTTAAATCCGAATCCGTGGTTCCCCCCAACTACAGCGAGGGGACTTTGCC
TTATTCCTACAATCTATGTGTTGCACATACAGGAAAGACGGAGTTTAATTTCCTAAAATGTAGTGAGCAG
TTGAGTTCAGGACAAGACATACTTTGCGGTGATTCATCTGGGGCCTTATTTCCACTTTGTAATTCCAGTG
AATTGACTTCCCATCAGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCGGCAC
CAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAACAACCAGTTTGACACAGAGATGCTGCAA
GCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCTCCACCCTGGGAGGGGGTGCCGGCACCA
TGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCACGTGCCCGACTACCGCCAGAATGTCTA
CATCCCAGGCAGCAATGCCACACTGACCAACGCAGCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGC
AATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAA

Translation (923 aa):
MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSS
EKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFEL
QISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPEMVLKTPLDREKQKSYHL
TLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFS
FSEASQITQFDLNSNTGEITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSL
PNLIMEDAELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITV
TATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIM
ASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVDDRNDNAPRV
LYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARAL
GDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVL
FLVAMILAIALRLRRSSSPASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQ
LSSGQDILCGDSSGALFPLCNSSELTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ
AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGG
NGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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