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Report for CCDS54923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54923.1 Public Homo sapiens 5 PCDHGB1 24 110 108 CCDS HistoryNCBI Gene:56104Re-query CCDS DB by CCDS ID:54923.1Re-query CCDS DB by GeneID:56104See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54923.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000523390.2 ENSP00000429273.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000523390.2Link to Ensembl Protein Viewer:ENSP00000429273.1Re-query CCDS DB by Nucleotide ID:ENST00000523390Re-query CCDS DB by Protein ID:ENSP00000429273
Original member Current member NCBI NM_018922.3 NP_061745.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018922.3Link to Protein Sequence:NP_061745.1Re-query CCDS DB by Nucleotide ID:NM_018922Re-query CCDS DB by Protein ID:NP_061745Link to BLAST:NP_061745.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061745.1 927 Q9Y5G3-1 927 100% 0 0

Chromosomal Locations for CCDS 54923.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141350261 141352669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2784 nt):
ATGCAGAGAGCCAGAGAAGCCGAAATGATGAAAAGTCAGGTACTGTTTCCCTTCCTGCTGTCTTTGTTCT
GCGGGGCCATCTCCCAGCAGATCCGATACACGATTCCAGAGGAGCTAGCCAACGGCTCACGGGTGGGGAA
ACTTGCCAAGGATCTGGGGCTCAGTGTCCGGGAGTTGCCAACTCGAAAACTGCGGGTTAGTGCAGAGGAT
TATTTCAACGTTAGTTTGGAGAGCGGGGATTTGTTAGTGAACGGTAGGATAGATCGAGAGAAGATTTGCG
GAAGGAAACTTGAGTGTGCACTAGAATTCGAAACGGTCGCTGAAAACCCAATGAATGTTTTCCACGTGGT
TGTTGTAATCCAAGATATTAATGACAATGCACCACGTTTCGTTGCAAAAGGCATTGACTTAGAAATTTGT
GAGTCAGCCTTACCCGGGGTAAAATTCTCTCTGGATTCTGCTCAAGATGCAGATGTGGAAGGCAATTCAC
TGAAGTTATACACCATCAACCCCAATCAATACTTCTCTCTGTCAACGAAGGAAAGTCCTGATGGAAGTAA
ATATCCGGTATTACTGCTGGAAAAACCTCTAGACAGGGAACATCAGAGCTCTCATCGCTTAATCCTGACT
GCCATGGATGGCGGGGACCCGCCTCTAAGCGGCACCACCCATATCTGGATCCGAGTTACGGATGCCAATG
ATAATGCTCCCGTGTTTAGCCAGGAGGTATACAGGGTTAGCCTCCAAGAAAACGTACCGTGGGGAACCTC
CGTGCTGCGGGTGATGGCCACAGACCAGGATGAGGGCATTAATGCAGAGATCACCTATGCCTTCCTCAAT
TCCCCAATAAGTACCAGCCTCTTCAATCTCAATCCAAATACTGGCGACATCACAACCAATGGCACATTGG
ATTTTGAAGAGACAAGTAGATATGTGTTGAGTGTGGAAGCTAAGGATGGAGGAGTACACACAGCTCACTG
TAATGTTCAAATAGAAATTGTTGACGAGAATGACAATGCCCCAGAGGTGACATTCATGTCCTTCTCTAAC
CAGATTCCAGAGGATTCAGACCTTGGAACTGTAATAGCCCTCATAAAAGTGCGAGACAAGGATTCTGGGC
AAAATGGCATGGTGACATGCTATACTCAGGAAGAAGTTCCTTTCAAATTAGAATCCACCTCGAAGAATTA
TTACAAGCTGGTGATTGCTGGAGCCCTAAACCGGGAGCAGACAGCAGACTACAACGTCACAATCATAGCC
ACCGACAAGGGCAAACCAGCCCTTTCCTCCAGGACAAGCATCACCCTGCACATCTCCGACATCAACGACA
ATGCACCTGTTTTCCATCAGGCCTCCTATGTGGTCCACGTGTCTGAGAACAACCCACCTGGCGCCTCCAT
TGCACAAGTAAGCGCCTCCGACCCGGATTTGGGACCCAACGGCAGAGTCTCCTACTCTATTCTGGCCAGT
GACCTGGAGCCGCGGGAGCTGTTGTCCTACGTGTCCGTGAGCCCGCAGAGCGGGGTGGTGTTCGCGCAGC
GCGCCTTCGACCACGAGCAGCTGCGCGCCTTCGAGCTCACACTGCAGGCCAGGGACCAGGGCTCCCCCGC
GCTCAGCGCCAACGTGAGCCTGCGCGTGTTGGTGGGCGACCTCAATGACAATGCGCCACGGGTGCTGTAC
CCCGCGCTGGGGCCTGATGGCTCCGCCCTCTTCGATATGGTGCCACGCGCCGCAGAGCCCGGCTACCTGG
TGACCAAGGTGGTGGCGGTGGACGCAGACTCAGGACACAACGCTTGGCTGTCCTACCACGTGCTGCAGGC
CAGCGAGCCCGGGCTCTTCAGCCTGGGGTTGCGCACGGGTGAGGTGCGCACAGCGCGTGCCTTGGGCGAC
AGGGACGCGGCCCGCCAGCGCCTGCTGGTCGCTGTGCGTGATGGAGGACAGCCGCCACTCTCCGCCACCG
CCACGCTGCACCTAATCTTCGCGGATAGCCTGCAAGAGGTATTGCCAGACCTCAGCGACCGCCCTGAGCC
CTCTGACCCCCAGACGGAACTGCAGTTTTACCTGGTTGTGGCCTTGGCCTTGATCTCAGTGCTCTTTCTC
CTCGCGGTGATTCTAGCGATCGCCCTGCGCCTGCGACGTTCCTCCAGCCTCGACACTGAGGGCTGCTTTC
AAACCGGTCTCTGCTCCAAGTCTGGGCCCGGGGTTCCTCCCAACCACAGCGAGGGGACTTTGCCCTATTC
CTACAATCTATGTATTGCCTCTCATTCTGCAAAGACAGAGTTTAATTCTCTCAACCTGACACCGGAAATG
GCTCCCCCTCAGGATCTGCTGTGTGATGATCCTTCTATGGTTGTATGTGCCAGTAATGAAGATCACAAAA
TCGCTTATGACCCTTCTTTGTCTTCGCACCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCA
GAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAACAACCAGTTTGACACA
GAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCTCCACCCTGGGAGGGG
GTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCACGTGCCCGACTACCG
CCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACCAACGCAGCTGGCAAGCGGGATGGCAAGGCC
CCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAA

Translation (927 aa):
MQRAREAEMMKSQVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED
YFNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVAKGIDLEIC
ESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLLLEKPLDREHQSSHRLILT
AMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENVPWGTSVLRVMATDQDEGINAEITYAFLN
SPISTSLFNLNPNTGDITTNGTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSN
QIPEDSDLGTVIALIKVRDKDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIA
TDKGKPALSSRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS
DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLY
PALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGD
RDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRPEPSDPQTELQFYLVVALALISVLFL
LAVILAIALRLRRSSSLDTEGCFQTGLCSKSGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEM
APPQDLLCDDPSMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT
EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA
PAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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