NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54902.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54902.1 Public Homo sapiens 5 SHROOM1 24 110 108 CCDS HistoryNCBI Gene:134549Re-query CCDS DB by CCDS ID:54902.1Re-query CCDS DB by GeneID:134549See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54902.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378679.8 ENSP00000367950.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378679.8Link to Ensembl Protein Viewer:ENSP00000367950.3Re-query CCDS DB by Nucleotide ID:ENST00000378679Re-query CCDS DB by Protein ID:ENSP00000367950
Original member Current member EBI ENST00000617339.4 ENSP00000478436.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617339.4Link to Ensembl Protein Viewer:ENSP00000478436.1Re-query CCDS DB by Nucleotide ID:ENST00000617339Re-query CCDS DB by Protein ID:ENSP00000478436
Original member Current member NCBI NM_001172700.2 NP_001166171.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001172700.2Link to Protein Sequence:NP_001166171.1Re-query CCDS DB by Nucleotide ID:NM_001172700Re-query CCDS DB by Protein ID:NP_001166171Link to BLAST:NP_001166171.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166171.1 852 Q2M3G4-1 852 100% 0 0

Chromosomal Locations for CCDS 54902.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 132822796 132823128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132823250 132823522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132823623 132823764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132823850 132824419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132824615 132824821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132825018 132825073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132825163 132826140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2559 nt):
ATGGAGGCCCTGGGACCTGGGGGCGACCGCGCCTCCCCGGCCTCGTCCACTAGCAGCCTGGACCTGTGGC
ATCTGTCCATGCGCGCGGACTCGGCCTACAGCTCTTTCTCCGCAGCCTCCGGCGGCCCCGAGCCGCGCAC
GCAGTCGCCGGGGACAGACCTCCTTCCTTACCTAGACTGGGACTACGTGCGTGTGGTTTGGGGCGGCCCG
GGCCCCGCCCCGCCCGACGCTGCCCTTTGCACATCCCCGCGGCCCCGGCCCGCGGTTGCAGCCCGCAGTG
GGCCGCAGCCAACAGAGGTCCCGGGGACCCCGGGACCACTGAACAGGCAGGCCACCCCGCTGCTGTACGC
GCTGGCGGCCGAGGCGGAGGCCGCGGCGCAGGCTGCCGAGCCGCCCAGCCCGCCGGCCTCGAGGGCCGCC
TACCGCCAGCGGCTTCAGGGCGCGCAGCGGCGAGTGCTCCGGGAGACGTCGTTCCAGCGCAAGGAGCTCC
GCATGAGCCTGCCCGCCCGTCTGCGGCCCACTGTCCCAGCGCGGCCCCCGGCGACTCACCCGCGCTCCGC
CTCGCTCAGCCACCCGGGCGGGGAGGGGGAGCCGGCGCGCTCCCGGGCTCCCGCGCCAGGAACTGCCGGC
CGGGGTCCCCTCGCCAACCAGCAGCGGAAGTGGTGCTTCTCAGAGCCAGGAAAGCTGGATCGTGTGGGTC
GGGGCGGTGGGCCGGCGCGGGAATGCCTGGGTGAGGCCTGCTCCAGCTCTGGCCTCCCTGGGCCCGAGCC
CTTGGAGTTCCAGCATCCGGCGCTGGCTAAGTTTGAAGATCACGAGGTCGGATGGCTGCCCGAGACGCAA
CCCCAAGGCTCCATGAACCTGGACTCCGGGTCCTTGAAGCTCGGTGATGCCTTCAGGCCCGCCAGTCGGA
GTCGGAGCGCTTCAGGCGAAGTCTTGGGTTCCTGGGGAGGATCAGGAGGGACCATACCCATTGTCCAGGC
TGTTCCCCAAGGAGCAGAAACCCCCAGACCATTGTTTCAGACCAAACTTTCCAGGTTCTTGCCTCAGAAA
GAGGCTGCGGTGATGTATCCTGCAGAGTTACCCCAGAGCAGCCCTGCTGACAGTGAACAGAGGGTCTCAG
AGACCTGCATTGTGCCTGCCTGGCTCCCCTCCCTTCCTGATGAAGTGTTCCTAGAAGAGGCCCCACTGGT
CAGAATGAGATCACCACCAGACCCCCATGCCTCCCAGGGGCCCCCAGCCAGTGTCCATGCCTCTGACCAG
CCGTATGGAACTGGCTTAGGCCAAAGAACTGGCCAGGTTACAGTCCCCACAGAGTACCCGCTCCATGAGT
GTCCAGGAACTGCAGGGGCAGATGACTGCTGGCAGGGGGTGAATGGTTCTGTAGGTATTTCCAGGCCCAC
AAGCCACACCCCCACTGGGACTGCAAATGATAACATCCCAACTATTGACCCCACTGGACTGACCACCAAT
CCCCCCACAGCTGCAGAGAGTGACCTCCTCAAACCTGTCCCAGCTGATGCCTTGGGACTTTCAGGCAATG
ATACTCCAGGTCCCTCTCACAATACTGCCCTAGCCAGGGGCACTGGCCAGCCTGGTTCCAGGCCCACATG
GCCTAGTCAGTGCCTCGAGGAGCTGGTTCAGGAGCTGGCCAGATTAGATCCCTCTCTATGTGACCCTCTT
GCTTCCCAGCCCAGCCCAGAGCCACCCCTGGGCCTGCTGGATGGACTGATTCCTTTAGCAGAGGTCCGGG
CTGCAATGCGGCCTGCCTGTGGGGAGGCTGGAGAGGAGGCTGCCAGTACTTTTGAGCCAGGGTCCTATCA
GTTCAGCTTCACCCAGCTCCTGCCGGCTCCTCGGGAGGAGACAAGGCTTGAAAACCCTGCCACCCACCCT
GTGCTTGACCAGCCATGTGGGCAGGGGCTCCCTGCACCAAACAACAGCATCCAGGGCAAGAAAGTGGAGC
TGGCCGCCCGCCTCCAAAAGATGCTTCAGGACCTTCACACGGAGCAGGAGCGGCTGCAGGGGGAGGCACA
AGCGTGGGCCAGGCGCCAAGCGGCTCTGGAGGCTGCAGTGCGCCAGGCCTGTGCCCCTCAGGAGCTGGAG
CGGTTCAGCCGGTTCATGGCCGACCTAGAGCGCGTGCTTGGCCTTCTGCTGCTGCTGGGCAGTCGCCTGG
CGCGCGTGCGCCGCGCCCTGGCCCGGGCGGCCTCAGACAGCGACCCTGATGAGCAGGCCTCCCTGCTGCA
GCGACTCCGGCTCCTGCAGCGGCAGGAGGAGGACGCCAAGGAGCTGAAGGAGCACGTAGCGCGGCGCGAG
CGGGCCGTGCGGGAGGTGCTGGTGCGAGCACTACCGGTGGAGGAGCTGCGCGTCTATTGCGCCCTGCTGG
CGGGCAAGGCCGCCGTCCTGGCCCAGCAGCGCAACCTGGACGAGCGCATCCGCCTCCTTCAGGACCAACT
GGACGCCATCAGGGACGACCTTGGCCATCATGCCCCGTCTCCCAGCCCGGCGCGGCCCCCAGGGACCTGT
CCTCCAGTTCAGCCGCCCTTCCCTCTTCTCCTTACATAG

Translation (852 aa):
MEALGPGGDRASPASSTSSLDLWHLSMRADSAYSSFSAASGGPEPRTQSPGTDLLPYLDWDYVRVVWGGP
GPAPPDAALCTSPRPRPAVAARSGPQPTEVPGTPGPLNRQATPLLYALAAEAEAAAQAAEPPSPPASRAA
YRQRLQGAQRRVLRETSFQRKELRMSLPARLRPTVPARPPATHPRSASLSHPGGEGEPARSRAPAPGTAG
RGPLANQQRKWCFSEPGKLDRVGRGGGPARECLGEACSSSGLPGPEPLEFQHPALAKFEDHEVGWLPETQ
PQGSMNLDSGSLKLGDAFRPASRSRSASGEVLGSWGGSGGTIPIVQAVPQGAETPRPLFQTKLSRFLPQK
EAAVMYPAELPQSSPADSEQRVSETCIVPAWLPSLPDEVFLEEAPLVRMRSPPDPHASQGPPASVHASDQ
PYGTGLGQRTGQVTVPTEYPLHECPGTAGADDCWQGVNGSVGISRPTSHTPTGTANDNIPTIDPTGLTTN
PPTAAESDLLKPVPADALGLSGNDTPGPSHNTALARGTGQPGSRPTWPSQCLEELVQELARLDPSLCDPL
ASQPSPEPPLGLLDGLIPLAEVRAAMRPACGEAGEEAASTFEPGSYQFSFTQLLPAPREETRLENPATHP
VLDQPCGQGLPAPNNSIQGKKVELAARLQKMLQDLHTEQERLQGEAQAWARRQAALEAAVRQACAPQELE
RFSRFMADLERVLGLLLLLGSRLARVRRALARAASDSDPDEQASLLQRLRLLQRQEEDAKELKEHVARRE
RAVREVLVRALPVEELRVYCALLAGKAAVLAQQRNLDERIRLLQDQLDAIRDDLGHHAPSPSPARPPGTC
PPVQPPFPLLLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH