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Report for CCDS54889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54889.1 Public Homo sapiens 5 FAM170A 24 110 108 CCDS HistoryNCBI Gene:340069Re-query CCDS DB by CCDS ID:54889.1Re-query CCDS DB by GeneID:340069See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 54889.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379555.7 ENSP00000368873.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379555.7Link to Ensembl Protein Viewer:ENSP00000368873.3Re-query CCDS DB by Nucleotide ID:ENST00000379555Re-query CCDS DB by Protein ID:ENSP00000368873
Original member Current member NCBI NM_001163991.2 NP_001157463.1 Accepted alive Link to Nucleotide Sequence:NM_001163991.2Link to Protein Sequence:NP_001157463.1Re-query CCDS DB by Nucleotide ID:NM_001163991Re-query CCDS DB by Protein ID:NP_001157463Link to BLAST:NP_001157463.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157463.1 282 A1A519-3 282 100% 0 0

Chromosomal Locations for CCDS 54889.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 119629769 119629838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119633960 119634734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119635031 119635034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGAAACGACGACAAAAGAGGAAACATTTGGAAAATGAAGAGTCCCAGGAAACCGCTGAGAAGGGAGGAG
GAATCCAGAGAATACATCGAGACAGCCCCCAGCCTCAATCACCCCTGGCCCAGGTTCAGGAACGAGGAGA
GACTCCTCCCCGCTCACAACATGTCTCCTTGTCGTCCTATTCATCCTATAAGACTTGTGTGTCCTCTCTG
TGTGTAAACAAAGAGGAAAGGGGCATGAAAATATACTACATGCAGGTACAAATGAACAAAGGTGTGGCTG
TCTCCTGGGAGACAGAGGAAACTTTGGAGTCCTTAGAAAAGCAGCCAAGGATGGAAGAAGTGACCCTTTC
TGAGGTTGTGAGGGTAGGTACTCCCCCCTCTGATGTGTCCACCAGAAACCTCCTGTCTGACAGTGAGCCC
AGTGGGGAGGAGAAAGAGCATGAGGAAAGGACAGAATCAGACAGCCTGCCAGGCTCACCCACCGTTGAGG
ACACACCCAGAGCCAAGACTCCTGACTGGCTGGTGACCATGGAGAACGGCTTCAGGTGCATGGCCTGCTG
CCGGGTGTTCACCACCATGGAAGCCCTCCAGGAGCATGTGCAGTTTGGGATCAGAGAGGGCTTCAGCTGC
CACGTCTTTCATCTCACCATGGCTCAGCTGACAGGCAACATGGAATCAGAGAGCACCCAAGATGAGCAGG
AGGAGGAAAATGGAAATGAGAAGGAGGAGGAAGAGAAACCAGAAGCAAAGGAGGAGGAGGGGCAGCCCAC
AGAAGAAGACCTTGGCCTGAGGAGATCCTGGAGCCAATGTCCAGGCTGTGTGTTTCATTCTCCAAAGGAC
AGGAACTGA

Translation (282 aa):
MKRRQKRKHLENEESQETAEKGGGIQRIHRDSPQPQSPLAQVQERGETPPRSQHVSLSSYSSYKTCVSSL
CVNKEERGMKIYYMQVQMNKGVAVSWETEETLESLEKQPRMEEVTLSEVVRVGTPPSDVSTRNLLSDSEP
SGEEKEHEERTESDSLPGSPTVEDTPRAKTPDWLVTMENGFRCMACCRVFTTMEALQEHVQFGIREGFSC
HVFHLTMAQLTGNMESESTQDEQEEENGNEKEEEEKPEAKEEEGQPTEEDLGLRRSWSQCPGCVFHSPKD
RN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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