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Report for CCDS54855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54855.1 Public Homo sapiens 5 DDX4 24 110 108 CCDS HistoryNCBI Gene:54514Re-query CCDS DB by CCDS ID:54855.1Re-query CCDS DB by GeneID:54514See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54855.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000511853.1 ENSP00000423123.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511853.1Link to Ensembl Protein Viewer:ENSP00000423123.1Re-query CCDS DB by Nucleotide ID:ENST00000511853Re-query CCDS DB by Protein ID:ENSP00000423123
Original member Current member NCBI NM_001166534.2 NP_001160006.1 Accepted alive Link to Nucleotide Sequence:NM_001166534.2Link to Protein Sequence:NP_001160006.1Re-query CCDS DB by Nucleotide ID:NM_001166534Re-query CCDS DB by Protein ID:NP_001160006Link to BLAST:NP_001160006.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160006.1 575 Q9NQI0-3 575 100% 0 0

Chromosomal Locations for CCDS 54855.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 55766930 55766966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55767881 55767940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55781066 55781146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55781934 55781981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55785447 55785494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55785729 55785871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55786518 55786670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55787846 55788000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55790576 55790705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55792641 55792807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55798426 55798571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55813673 55813772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55814901 55815171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55815313 55815423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55816463 55816540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGGGGTCTAGGAATTTATTTTTAACCAACTCTCCAGAGTCTAGTAATGACTGCGAAGATAATCCAACAC
GGAACAGAGGGTTTTCCAAGAGAGGCGATAATGACTTAGACCCAGACGAATGTATGCAGCGCACTGGTGG
CCTTTTTGGTTCTAGAAGACCAGTATTAAGTGGCACAGGTAATGGTGATACTTCTCAAAGCAGAAGTGGC
AGTGGAAGTGAACGAGATTCTTGGAAGTCAGAAGCAGAAGGAGGAGAAAGTAGTGATACTCAAGGACCAA
AAGTGACCTACATACCCCCTCCTCCACCTGAGGATGAGGACTCCATCTTTGCACATTATCAGACAGGCAT
AAACTTCGACAAATACGACACTATTCTTGTGGAAGTGTCTGGACATGATGCACCACCAGCAATTCTGACT
TTTGAAGAAGCTAATCTCTGTCAGACACTGAATAACAACATTGCTAAAGCTGGTTATACTAAGCTTACTC
CTGTGCAAAAATACAGTATTCCTATCATACTTGCAGGACGAGATTTGATGGCTTGCGCTCAAACAGGGTC
TGGGAAGACTGCGGCTTTTCTCCTACCAATTTTGGCTCATATGATGCATGATGGAATAACTGCCAGTCGT
TTTAAAGAGTTGCAGGAACCAGAGTGTATTATTGTAGCACCAACTCGAGAATTGGTCAACCAGATTTATT
TGGAAGCCAGAAAATTTTCTTTTGGGACTTGTGTAAGAGCTGTTGTTATATATGGGGGAACCCAGCTGGG
ACATTCAATTCGACAAATAGTACAAGGCTGTAATATATTATGTGCTACTCCTGGAAGACTGATGGATATC
ATAGGCAAAGAAAAGATTGGTCTCAAACAGATCAAATACTTAGTTTTGGATGAAGCTGATCGCATGTTGG
ATATGGGTTTTGGTCCAGAAATGAAGAAGTTAATTTCTTGCCCAGGAATGCCATCAAAGGAACAGCGCCA
AACCCTTATGTTCAGTGCAACTTTTCCAGAGGAAATTCAAAGGTTGGCTGCAGAGTTTTTAAAGTCAAAT
TATCTGTTTGTTGCTGTTGGACAAGTGGGTGGAGCATGTAGAGATGTTCAGCAGACCGTTCTCCAAGTTG
GCCAGTTCTCAAAAAGAGAAAAGCTCGTTGAAATTCTGCGAAACATAGGGGATGAAAGAACTATGGTCTT
TGTTGAAACTAAGAAAAAAGCAGATTTTATTGCAACTTTTCTTTGTCAAGAAAAAATATCAACTACAAGT
ATTCATGGTGATCGGGAACAGAGAGAGCGGGAGCAAGCTCTTGGAGATTTTCGCTTTGGAAAGTGCCCAG
TTCTTGTTGCTACTTCAGTAGCTGCCAGAGGGCTGGATATTGAAAATGTGCAACATGTTATCAATTTTGA
TCTTCCTTCTACCATTGATGAATATGTTCATCGAATTGGGCGTACTGGTCGTTGTGGGAATACTGGCAGA
GCAATTTCCTTTTTTGATCTTGAATCGGATAACCATTTAGCACAGCCTCTAGTAAAAGTATTGACAGATG
CTCAACAGGATGTTCCTGCATGGTTGGAAGAAATTGCCTTTAGTACATACATTCCTGGCTTCAGTGGTAG
TACAAGAGGAAACGTGTTTGCATCAGTTGATACCAGAAAGGGCAAGAGCACTTTGAACACAGCTGGGTTT
TCTTCTTCACAAGCTCCCAATCCAGTAGATGATGAGTCATGGGATTAA

Translation (575 aa):
MGSRNLFLTNSPESSNDCEDNPTRNRGFSKRGDNDLDPDECMQRTGGLFGSRRPVLSGTGNGDTSQSRSG
SGSERDSWKSEAEGGESSDTQGPKVTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGHDAPPAILT
FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASR
FKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDI
IGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSN
YLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTS
IHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGR
AISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRKGKSTLNTAGF
SSSQAPNPVDDESWD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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