NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54848.1 Public Homo sapiens 5 FYB1 24 110 108 CCDS HistoryNCBI Gene:2533Re-query CCDS DB by CCDS ID:54848.1Re-query CCDS DB by GeneID:2533See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54848.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000512982.4 ENSP00000425845.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000512982.4Link to Ensembl Protein Viewer:ENSP00000425845.3Re-query CCDS DB by Nucleotide ID:ENST00000512982Re-query CCDS DB by Protein ID:ENSP00000425845
Original member Current member NCBI NM_001349333.2 NP_001336262.1 Accepted alive Link to Nucleotide Sequence:NM_001349333.2Link to Protein Sequence:NP_001336262.1Re-query CCDS DB by Nucleotide ID:NM_001349333Re-query CCDS DB by Protein ID:NP_001336262Link to BLAST:NP_001336262.1
Original member Current member NCBI NM_001465.6 NP_001456.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001465.6Link to Protein Sequence:NP_001456.3Re-query CCDS DB by Nucleotide ID:NM_001465Re-query CCDS DB by Protein ID:NP_001456Link to BLAST:NP_001456.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001336262.1 829 O15117-2 829 100% 0 0
NP_001456.3 829 O15117-2 829 100% 0 0

Chromosomal Locations for CCDS 54848.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 39107443 39107465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39108231 39108262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39110356 39110389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39118874 39119036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39119535 39119634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39122336 39122402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39124253 39124278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39125998 39126135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39127741 39127807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39130590 39130612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39134208 39134349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39134855 39135014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39137600 39137720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39138657 39138691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39139233 39139252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39141095 39141141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39153448 39153604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39201826 39202960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2490 nt):
ATGGCGAAATATAACACGGGGGGCAACCCGACAGAGGATGTCTCAGTCAATAGCCGACCCTTCAGAGTCA
CA
GGGCCAAACTCATCTTCAGGAATACAAGCAAGAAAGAACTTATTCAACAACCAAGGAAATGCCAGCCC
T
CCTGCAGGACCCAGCAATGTACCTAAGTTTGGGTCCCCAAAGCCACCTGTGGCAGTCAAACCTTCTTCT
GAG
GAAAAGCCTGACAAGGAACCCAAGCCCCCGTTTCTAAAGCCCACTGGAGCAGGCCAAAGATTCGGAA
CA
CCAGCCAGCTTGACCACCAGAGACCCCGAGGCGAAAGTGGGATTTCTGAAACCTGTAGGCCCCAAGCC
C
ATCAACTTGCCCAAAGAAGATTCCAAACCTACATTTCCCTGGCCTCCTGGAAACAAGCCATCTCTTCAC
AGT
GTAAACCAAGACCATGACTTAAAGCCACTAGGCCCGAAATCTGGGCCTACTCCTCCAACCTCAGAAA
AT
GAACAGAAGCAAGCGTTTCCCAAATTGACTGGGGTTAAAGGGAAATTTATGTCAGCATCACAAGATCT
T
GAACCCAAGCCCCTCTTCCCCAAACCCGCCTTTGGCCAGAAGCCGCCCCTAAGTACCGAGAACTCCCAT
GAA
GACGAAAGCCCCATGAAGAATGTGTCTTCATCAAAAGGGTCCCCAGCTCCCCTGGGAGTCAGGTCCA
AA
AGCGGCCCTTTAAAACCAGCAAGGGAAGACTCAGAAAATAAAGACCATGCAGGGGAGATTTCAAGTTT
G
CCCTTTCCTGGAGTGGTTTTGAAACCTGCTGCGAGCAGGGGAGGCCCAGGTCTCTCCAAAAATGGTGAA
GAA
AAAAAGGAAGATAGGAAGATAGATGCTGCTAAGAACACCTTCCAGAGCAAAATAAATCAGGAAGAGT
TG
GCCTCAGGGACTCCTCCTGCCAGGTTCCCTAAGGCCCCTTCTAAGCTGACAGTGGGGGGGCCATGGGG
C
CAAAGTCAGGAAAAGGAAAAGGGAGACAAGAATTCAGCCACCCCGAAACAGAAGCCATTGCCTCCCTTG
TTT
ACCTTGGGTCCACCTCCACCAAAACCCAACAGACCACCAAATGTTGACCTGACGAAATTCCACAAAA
CC
TCTTCTGGAAACAGTACTAGCAAAGGCCAGACGTCTTACTCAACAACTTCCCTGCCACCACCTCCACC
A
TCCCATCCGGCCAGCCAACCACCATTGCCAGCATCTCACCCATCACAACCACCAGTCCCAAGCCTACCT
CCC
AGAAACATTAAACCTCCGTTTGACCTAAAAAGCCCTGTCAATGAAGACAATCAAGATGGTGTCACGC
AC
TCTGATGGTGCTGGAAATCTAGATGAGGAACAAGACAGTGAAGGAGAAACATATGAAGACATAGAAGC
A
TCCAAAGAAAGAGAGAAGAAAAGGGAAAAGGAAGAAAAGAAGAGGTTAGAGCTGGAGAAAAAGGAACAG
AAA
GAGAAAGAAAAGAAAGAACAAGAAATAAAGAAGAAATTTAAACTAACAGGCCCTATTCAAGTCATCC
AT
CTTGCAAAAGCTTGTTGTGATGTCAAAGGAGGAAAGAATGAACTGAGCTTCAAGCAAGGAGAGCAAAT
T
GAAATCATCCGCATCACAGACAACCCAGAAGGAAAATGGTTGGGCAGAACAGCAAGGGGTTCATATGGC
TAT
ATTAAAACAACTGCTGTAGAGATTGACTATGATTCTTTGAAACTGAAAAAAGACTCTCTTGGTGCCC
CT
TCAAGACCTATTGAAGATGACCAAGAAGTATATGATGATGTTGCAGAGCAGGATGATATTAGCAGCCA
C
AGTCAGAGTGGAAGTGGAGGGATATTCCCTCCACCACCAGATGATGACATTTATGATGGGATTGAAGAG
GAA
GATGCTGATGATGGCTCCACACTACAGGTTCAAGAGAAGAGTAATACGTGGTCCTGGGGGATTTTGA
AG
ATGTTAAAGGGAAAAGATGACAGAAAGAAAAGTATACGAGAGAAACCTAAAGTCTCTGACTCAGACAA
T
AATGAAGGTTCATCTTTCCCTGCTCCTCCTAAACAATTGGACATGGGAGATGAAGTTTACGATGATGTG
GAT
ACCTCTGATTTCCCTGTTTCATCAGCAGAGATGAGTCAAGGAACTAATGTTGGAAAAGCTAAGACAG
AA
GAAAAGGACCTTAAGAAGCTAAAAAAGCAGGAAAAAGAAGAAAAAGACTTCAGGAAAAAATTTAAATA
T
GATGGTGAAATTAGAGTCCTATATTCAACTAAAGTTACAACTTCCATAACTTCTAAAAAGTGGGGAACC
AGA
GATCTACAGGTAAAACCTGGTGAATCTCTAGAAGTTATACAAACCACAGATGACACAAAAGTTCTCT
GC
AGAAATGAAGAAGGGAAATATGGTTATGTCCTTCGGAGTTACCTAGCGGACAATGATGGAGAGATCTA
T
GATGATATTGCTGATGGCTGCATCTATGACAATGACTAG


Translation (829 aa):
MAKYNTGGNPTEDVSVNSRPFRVTGPNSSSGIQARKNLFNNQGNASPPAGPSNVPKFGSPKPPVAVKPSS
E
EKPDKEPKPPFLKPTGAGQRFGTPASLTTRDPEAKVGFLKPVGPKPINLPKEDSKPTFPWPPGNKPSLH
S
VNQDHDLKPLGPKSGPTPPTSENEQKQAFPKLTGVKGKFMSASQDLEPKPLFPKPAFGQKPPLSTENSH
E
DESPMKNVSSSKGSPAPLGVRSKSGPLKPAREDSENKDHAGEISSLPFPGVVLKPAASRGGPGLSKNGE
E
KKEDRKIDAAKNTFQSKINQEELASGTPPARFPKAPSKLTVGGPWGQSQEKEKGDKNSATPKQKPLPPL
F
TLGPPPPKPNRPPNVDLTKFHKTSSGN
STSKGQTSYSTTSLPPPPPSHPASQPPLPASHPSQPPVPSLP
P
RNIKPPFDL
KSPVNEDNQDGVTHSDGAGNLDEEQDSEGETYEDIEASKEREKKREKEEKKRLELEKKEQ
K
EKEKKEQEIKKKFK
LTGPIQVIHLAKACCDVKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYG
Y
IKTTAVEIDYDSLKLKKDSLGAPSRPIEDDQEVYDDVAEQDDIS
SHSQSGSGGIFPPPPDDDIYDGIEE
E
DADD
GSTLQVQEKSNTWSWGILKMLKGKDDRKKSIREKPKVSDSDNNEGSSFPAPPKQLDMGDEVYDDV
D
TSDFPVSSAEM
SQGTNVGKAKTEEKDLKKLKKQEKEEKDFRKKFKYDGEIRVLYSTKVTTSITSKKWGT
R
DLQVKPGESLEVIQTTDDTKVLCRNEEGK
YGYVLRSYLADNDGEIYDDIADGCIYDND



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser