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Report for CCDS54799.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54799.1 Public Homo sapiens 4 BBS7 24 110 108 CCDS HistoryNCBI Gene:55212Re-query CCDS DB by CCDS ID:54799.1Re-query CCDS DB by GeneID:55212See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54799.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000506636.1 ENSP00000423626.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506636.1Link to Ensembl Protein Viewer:ENSP00000423626.1Re-query CCDS DB by Nucleotide ID:ENST00000506636Re-query CCDS DB by Protein ID:ENSP00000423626
Original member Current member NCBI NM_018190.4 NP_060660.2 Accepted alive Link to Nucleotide Sequence:NM_018190.4Link to Protein Sequence:NP_060660.2Re-query CCDS DB by Nucleotide ID:NM_018190Re-query CCDS DB by Protein ID:NP_060660Link to BLAST:NP_060660.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060660.2 672 Q8IWZ6-2 672 100% 0 0

Chromosomal Locations for CCDS 54799.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 121828141 121828269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121828402 121828505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121828619 121828728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121833231 121833395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121835144 121835283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121839631 121839696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121843927 121844001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121845504 121845696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121847404 121847506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121848844 121848928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121852956 121853086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121854704 121854820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121855489 121855561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121858992 121859178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121861504 121861679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121863217 121863279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121867981 121868046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121870278 121870313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2019 nt):
ATGGATCTGATTTTAAACCGAATGGATTATCTGCAGGTGGGAGTAACATCTCAGAAGACTATGAAGCTAA
TTCCTGCCTCAAGACACAGAGCTACACAAAAGGTGGTTATTGGAGATCATGATGGGGTAGTTATGTGCTT
TGGCATGAAGAAAGGAGAAGCAGCAGCAGTGTTCAAGACTTTACCCGGGCCGAAGATTGCAAGGCTGGAA
CTGGGAGGGGTTATCAACACACCTCAGGAGAAAATTTTTATTGCTGCAGCATCTGAGATTAGAGGCTTCA
CAAAAAGAGGAAAACAGTTCCTCTCCTTTGAAACAAACCTCACTGAAAGCATTAAAGCTATGCACATATC
TGGCTCAGACCTCTTTCTCAGTGCAAGTTACATCTATAACCATTATTGTGACTGCAAAGACCAACATTAT
TACCTTTCTGGGGATAAAATCAATGATGTGATCTGCCTTCCAGTGGAAAGATTATCTCGTATCACACCTG
TATTGGCCTGCCAGGACAGAGTGCTCAGAGTTTTACAGGGATCTGATGTGATGTATGCAGTTGAAGTTCC
TGGACCCCCTACTGTCTTAGCACTACACAATGGAAATGGCGGTGACTCTGGAGAAGACCTTTTGTTTGGG
ACATCAGACGGAAAACTTGCGCTTATACAGATTACTACATCCAAACCAGTACGCAAGTGGGAAATTCAAA
ATGAGAAAAAGAGAGGAGGTATTTTGTGTATTGACAGCTTTGACATTGTGGGTGATGGGGTTAAAGATTT
ACTTGTTGGGAGAGATGACGGAATGGTGGAAGTGTATAGTTTTGATAATGCAAATGAACCTGTTCTACGA
TTTGATCAGATGTTGTCTGAAAGCGTCACATCTATCCAGGGTGGTTGTGTAGGAAAAGACAGCTATGATG
AAATCGTGGTGTCCACATATTCAGGCTGGGTTACAGGTCTGACAACAGAGCCCATTCATAAGGAAAGTGG
ACCAGGAGAAGAACTAAAAATTAATCAGGAGATGCAGAATAAAATTTCTTCCTTACGGAATGAGTTGGAA
CATTTGCAGTATAAGGTATTGCAGGAAAGAGAGAATTATCAACAGTCTTCTCAATCAAGCAAAGCAAAAT
CAGCAGTACCTTCCTTTGGTATAAATGATAAATTTACACTAAATAAAGATGATGCCAGTTACAGCCTTAT
CTTAGAGGTACAGACTGCAATAGATAATGTCTTAATACAGAGTGATGTTCCAATAGATTTACTTGATGTG
GATAAAAATTCTGCTGTTGTTAGCTTTAGCAGCTGTGATTCTGAGTCAAACGACAACTTCCTTCTTGCCA
CTTATCGGTGCCAGGCAGATACTACAAGGCTGGAACTCAAGATTCGCTCAATTGAAGGCCAGTATGGCAC
ACTACAAGCATATGTGACTCCAAGAATTCAACCCAAAACCTGTCAGGTCCGCCAGTACCACATCAAACCT
CTTTCACTCCATCAAAGAACTCACTTTATTGATCATGACAGACCCATGAATACACTGACCCTAACAGGCC
AGTTCAGTTTTGCTGAAGTTCACTCCTGGGTGGTTTTTTGTCTGCCTGAAGTTCCAGAAAAACCTCCAGC
AGGAGAATGTGTGACATTTTACTTTCAGAACACCTTTCTAGATACACAACTTGAAAGTACCTACAGAAAA
GGAGAGGGAGTTTTTAAATCTGACAACATTTCTACTATCTCCATCCTAAAAGATGTGCTTTCTAAAGAAG
CTACAAAAAGGAAAATTAACCTCAACATATCATACGAGATAAATGAAGTATCAGTCAAACACACTTTAAA
GCTAATCCACCCAAAGCTGGAGTACCAGTTGCTTTTGGCTAAGAAAGTGCAGTTAATTGATGCTTTAAAA
GAATTACAGATTCATGAGGGAAATACGAACTTTCTGATACCAGAATATCACTGTATTCTAGAAGAGGCAG
ATCACCTACAGGAAGAATACAAAAAGCAACCTGCACATCTTGAAAGACTCTATGGTTAG

Translation (672 aa):
MDLILNRMDYLQVGVTSQKTMKLIPASRHRATQKVVIGDHDGVVMCFGMKKGEAAAVFKTLPGPKIARLE
LGGVINTPQEKIFIAAASEIRGFTKRGKQFLSFETNLTESIKAMHISGSDLFLSASYIYNHYCDCKDQHY
YLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDVMYAVEVPGPPTVLALHNGNGGDSGEDLLFG
TSDGKLALIQITTSKPVRKWEIQNEKKRGGILCIDSFDIVGDGVKDLLVGRDDGMVEVYSFDNANEPVLR
FDQMLSESVTSIQGGCVGKDSYDEIVVSTYSGWVTGLTTEPIHKESGPGEELKINQEMQNKISSLRNELE
HLQYKVLQERENYQQSSQSSKAKSAVPSFGINDKFTLNKDDASYSLILEVQTAIDNVLIQSDVPIDLLDV
DKNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIRSIEGQYGTLQAYVTPRIQPKTCQVRQYHIKP
LSLHQRTHFIDHDRPMNTLTLTGQFSFAEVHSWVVFCLPEVPEKPPAGECVTFYFQNTFLDTQLESTYRK
GEGVFKSDNISTISILKDVLSKEATKRKINLNISYEINEVSVKHTLKLIHPKLEYQLLLAKKVQLIDALK
ELQIHEGNTNFLIPEYHCILEEADHLQEEYKKQPAHLERLYG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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