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Report for CCDS54782.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54782.1 Public Homo sapiens 4 EMCN 24 110 108 CCDS HistoryNCBI Gene:51705Re-query CCDS DB by CCDS ID:54782.1Re-query CCDS DB by GeneID:51705See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54782.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000511970.5 ENSP00000422432.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511970.5Link to Ensembl Protein Viewer:ENSP00000422432.1Re-query CCDS DB by Nucleotide ID:ENST00000511970Re-query CCDS DB by Protein ID:ENSP00000422432
Original member Current member NCBI NM_001159694.2 NP_001153166.1 Accepted alive Link to Nucleotide Sequence:NM_001159694.2Link to Protein Sequence:NP_001153166.1Re-query CCDS DB by Nucleotide ID:NM_001159694Re-query CCDS DB by Protein ID:NP_001153166Link to BLAST:NP_001153166.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153166.1 248 Q9ULC0-3 248 100% 0 0

Chromosomal Locations for CCDS 54782.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 100410321 100410355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100415898 100415959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100417117 100417141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100421282 100421377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100423021 100423080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100423312 100423404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100465423 100465539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100475038 100475109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100479917 100480039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100517851 100517914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGGAACTGCTTCAAGTGACCATTCTTTTTCTTCTGCCCAGTATTTGCAGCAGTAACAGCACAGGTGTTT
TAGAGGCAGCTAATAATTCACTTGTTGTTACTACAACAAAACCATCTATAACAACACCAAACACAGAATC
ATTACAGAAAAATGTTGTCACACCAACAACTGGAACAACTCCTAAAGGAACAATCACCAATGAATTACTT
AAAATGTCTCTGATGTCAACAGCTACTTTTTTAACAAGTAAAGATGAAGGATTGAAAGCCACAACCACTG
ATGTCAGGAAGAATGACTCCATCATTTCAAACGTAACAGTAACAAGTGTTACACTTCCAAATGCTGTTTC
AACATTACAAAGTTCCAAACCCAAGAGTAGTGTTCTACAACCAGATGCATCACCTTCTAAAACTGGTACA
TTAACCTCAATACCAGTTACAATTCCAGAAAACACCTCACAGTCTCAAGTAATAGGCACTGAGGGTGGAA
AAAATGCAAGCACTTCAGCAACCAGCCGGTCTTATTCCAGTATTATTTTGCCGGTGGTTATTGCTTTGAT
TGTAATAACACTTTCAGTATTTGTTCTGGTGGGTTTGTACCGAATGTGCTGGAAGGCAGATCCGGGCACA
CCAGAAAATGGAAATGATCAACCTCAGTCTGATAAAGAGAGCGTGAAGCTTCTTACCGTTAAGACAATTT
CTCATGAGTCTGGTGAGCACTCTGCACAAGGAAAAACCAAGAACTGA

Translation (248 aa):
MELLQVTILFLLPSICSSNSTGVLEAANNSLVVTTTKPSITTPNTESLQKNVVTPTTGTTPKGTITNELL
KMSLMSTATFLTSKDEGLKATTTDVRKNDSIISNVTVTSVTLPNAVSTLQSSKPKSSVLQPDASPSKTGT
LTSIPVTIPENTSQSQVIGTEGGKNASTSATSRSYSSIILPVVIALIVITLSVFVLVGLYRMCWKADPGT
PENGNDQPQSDKESVKLLTVKTISHESGEHSAQGKTKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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