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Report for CCDS54759.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54759.1 Public Homo sapiens 4 PDS5A 24 110 108 CCDS HistoryNCBI Gene:23244Re-query CCDS DB by CCDS ID:54759.1Re-query CCDS DB by GeneID:23244See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54759.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000503396.5 ENSP00000426749.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503396.5Link to Ensembl Protein Viewer:ENSP00000426749.1Re-query CCDS DB by Nucleotide ID:ENST00000503396Re-query CCDS DB by Protein ID:ENSP00000426749
Original member Current member NCBI NM_001100400.2 NP_001093870.1 Accepted alive Link to Nucleotide Sequence:NM_001100400.2Link to Protein Sequence:NP_001093870.1Re-query CCDS DB by Nucleotide ID:NM_001100400Re-query CCDS DB by Protein ID:NP_001093870Link to BLAST:NP_001093870.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093870.1 600 Q29RF7-3 600 100% 0 0

Chromosomal Locations for CCDS 54759.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 39898356 39898528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39898777 39898825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39900426 39900507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39902347 39902460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39904040 39904191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39908395 39908540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39910244 39910338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39913611 39913726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39917048 39917188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39920319 39920399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39922622 39922748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39925836 39925933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39926775 39926861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39927961 39928164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39976440 39976577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGGACTTCACCGCGCAGCCCAAGCCTGCCACTGCCCTCTGTGGCGTCGTGAGTGCCGACGGGAAGATCG
CTTACCCTCCGGGGGTAAAAGAGATCACCGACAAGATCACCACGGACGAGATGATCAAACGCCTGAAGAT
GGTAGTGAAAACCTTTATGGATATGGATCAGGACTCAGAAGATGAAAAACAGCAGTATCTCCCACTAGCC
TTGCATCTTGCATCTGAATTCTTCCTCAGGAACCCCAATAAAGATGTGCGTCTCCTTGTAGCATGTTGTT
TGGCTGATATCTTTCGTATCTATGCCCCAGAAGCTCCATATACTTCCCATGATAAACTTAAGGACATATT
TTTGTTTATTACCAGACAATTAAAAGGTTTGGAGGATACAAAGAGTCCACAGTTTAATAGATACTTTTAT
TTATTAGAGAATTTAGCTTGGGTTAAATCATATAACATCTGCTTTGAATTGGAAGATTGCAATGAAATTT
TTATTCAGCTTTTTAGAACTCTCTTCTCAGTGATCAACAATAGCCACAATAAGAAGGTACAAATGCACAT
GCTAGATTTGATGAGTTCTATCATCATGGAAGGTGATGGAGTTACTCAAGAATTATTGGACTCCATTCTT
ATTAACCTCATTCCTGCACATAAGAACTTAAATAAACAGTCCTTTGACCTTGCAAAAGTGCTATTGAAAA
GAACAGTCCAGACTATTGAGGCATGCATTGCTAATTTTTTCAATCAAGTCCTGGTGCTGGGAAGATCATC
AGTAAGTGATTTGTCAGAACATGTATTTGATCTGATTCAGGAACTTTTTGCTATAGATCCTCATTTATTA
TTATCCGTCATGCCACAGCTTGAATTCAAACTAAAGAGCAATGATGGAGAAGAGCGATTAGCTGTTGTTC
GACTTCTAGCTAAATTGTTTGGCTCCAAAGATTCTGATTTGGCAACACAGAATCGTCCTCTTTGGCAATG
TTTTCTTGGACGATTTAATGATATTCATGTTCCTGTGAGATTAGAAAGTGTGAAATTTGCCAGTCATTGT
TTAATGAATCACCCAGATTTAGCGAAGGATCTCACAGAATATTTAAAGGTTAGATCACATGATCCAGAAG
AAGCTATTCGTCATGATGTCATTGTTACTATAATAACAGCTGCCAAGAGGGACCTGGCCTTAGTAAATGA
TCAGCTGCTTGGCTTTGTAAGGGAAAGAACACTGGATAAACGGTGGCGAGTAAGAAAAGAAGCTATGATG
GGTCTGGCTCAGCTTTATAAGAAATACTGTCTTCATGGTGAAGCAGGAAAGGAAGCTGCAGAGAAAGTCA
GCTGGATAAAGGACAAACTTCTGCATATTTATTATCAGAACAGCATTGACGACAAACTGTTGGTAGAGAA
AATCTTTGCTCAGTATCTTGTCCCCCACAACCTGGAAACAGAAGAGAGAATGAAATGCTTATATTACTTA
TATGCTAGTTTGGATCCAAATGCTGTAAAAGCTCTCAACGAAATGTGGAAGTGTCAGAACATGCTTCGGA
GCCATGTACGCGAACTATTGGATTTGCACAAGCAGCCTACATCAGAGGCTAACTGTTCTGCCATGTTTGG
AAAACTGATGACCATAGCAAAGAATTTGCCTGACCCCGGGAAAGCACAAGATTTTGTGAAGAAATTTAAC
CAGGTTCTCGGCGATGATGAGAAACTTCGGTCTCAGTTGGAGTTATTAATTAGCCCAACCTGTTCTTGCA
AACAAGCAGATATTTGTGTGGTTAGTAAATCATACTTCACACTTTTTCTCTAG

Translation (600 aa):
MDFTAQPKPATALCGVVSADGKIAYPPGVKEITDKITTDEMIKRLKMVVKTFMDMDQDSEDEKQQYLPLA
LHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFY
LLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSIL
INLIPAHKNLNKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPHLL
LSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKDSDLATQNRPLWQCFLGRFNDIHVPVRLESVKFASHC
LMNHPDLAKDLTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLALVNDQLLGFVRERTLDKRWRVRKEAMM
GLAQLYKKYCLHGEAGKEAAEKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLETEERMKCLYYL
YASLDPNAVKALNEMWKCQNMLRSHVRELLDLHKQPTSEANCSAMFGKLMTIAKNLPDPGKAQDFVKKFN
QVLGDDEKLRSQLELLISPTCSCKQADICVVSKSYFTLFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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