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Report for CCDS54751.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54751.1 Public Homo sapiens 4 STIM2 24 110 108 CCDS HistoryNCBI Gene:57620Re-query CCDS DB by CCDS ID:54751.1Re-query CCDS DB by GeneID:57620See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG
Non-AUG initiation codon

Sequence IDs included in CCDS 54751.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000465503.6 ENSP00000417569.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000465503.6Link to Ensembl Protein Viewer:ENSP00000417569.2Re-query CCDS DB by Nucleotide ID:ENST00000465503Re-query CCDS DB by Protein ID:ENSP00000417569
Original member Current member NCBI NM_001169118.2 NP_001162589.1 Accepted alive Link to Nucleotide Sequence:NM_001169118.2Link to Protein Sequence:NP_001162589.1Re-query CCDS DB by Nucleotide ID:NM_001169118Re-query CCDS DB by Protein ID:NP_001162589Link to BLAST:NP_001162589.1

Chromosomal Locations for CCDS 54751.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 26861219 26861369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26919504 26919634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26957612 26957726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26995379 26995490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26999232 26999347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 27002217 27002394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 27002927 27003104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 27007533 27007700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 27007983 27008006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 27008428 27008528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 27008764 27009002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 27017711 27017984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 27022519 27022996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol L (codon TTG) with M at amino acid position 1

Nucleotide Sequence (2265 nt):
TTGCTGGTGCTCGGGCTGCTGGTAGCCGGAGCGGCGGACGGATGCGAGCTTGTGCCCCGGCACCTCCGCG
GG
CGGCGGGCGACTGGCTCTGCCGCAACTGCCGCCTCCTCTCCCGCCGCGGCGGCCGGCGATAGCCCGGC
G
CTCATGACAGATCCCTGCATGTCACTGAGTCCACCATGCTTTACAGAAGAAGACAGATTTAGTCTGGAA
GCT
CTTCAAACAATACATAAACAAATGGATGATGACAAAGATGGTGGAATTGAAGTAGAGGAAAGTGATG
AA
TTCATCAGAGAAGATATGAAATATAAAGATGCTACTAATAAACACAGCCATCTGCACAGAGAAGATAA
A
CATATAACGATTGAGGATTTATGGAAACGATGGAAAACATCAGAAGTTCATAATTGGACCCTTGAAGAC
ACT
CTTCAGTGGTTGATAGAGTTTGTTGAACTACCCCAATATGAGAAGAATTTTAGAGACAACAATGTCA
AA
GGAACGACACTTCCCAGGATAGCAGTGCACGAACCTTCATTTATGATCTCCCAGTTGAAAATCAGTGA
C
CGGAGTCACAGACAAAAACTTCAGCTCAAGGCATTGGATGTGGTTTTGTTTGGACCTCTAACACGCCCA
CCT
CATAACTGGATGAAAGATTTTATCCTCACAGTTTCTATAGTAATTGGTGTTGGAGGCTGCTGGTTTG
CT
TATACGCAGAATAAGACATCAAAAGAACATGTTGCAAAAATGATGAAAGATTTAGAGAGCTTACAAAC
T
GCAGAGCAAAGTCTAATGGACTTACAGGAGAGGCTTGAAAAGGCACAGGAAGAAAACAGAAATGTTGCT
GTA
GAAAAGCAAAATTTAGAGCGCAAAATGATGGATGAAATCAATTATGCAAAGGAGGAGGCTTGTCGGC
TG
AGAGAGCTAAGGGAGGGAGCTGAATGTGAATTGAGTAGACGTCAGTATGCAGAACAGGAATTGGAACA
G
GTTCGCATGGCTCTGAAAAAGGCCGAAAAAGAATTTGAACTGAGAAGCAGTTGGTCTGTTCCAGATGCA
CTT
CAGAAATGGCTTCAGTTAACACATGAAGTAGAAGTGCAATACTACAATATTAAAAGACAAAACGCTG
AA
ATGCAGCTAGCTATTGCTAAAGATGAGGTTGCTGCTTCATATCTGATTCAGGCAGAAAAAATTAAAAA
G
AAGAGAAGCACAGTCTTTGGGACTCTGCACGTTGCACACAGCTCCTCCCTAGATGAGGTAGACCACAAA
ATT
CTGGAAGCAAAGAAAGCTCTCTCTGAGTTGACAACTTGTTTACGAGAACGACTTTTTCGCTGGCAAC
AA
ATTGAGAAGATCTGTGGCTTTCAGATAGCCCATAACTCAGGACTCCCCAGCCTGACCTCTTCCCTTTA
T
TCTGATCACAGCTGGGTGGTGATGCCCAGAGTCTCCATTCCACCCTATCCAATTGCTGGAGGAGTTGAT
GAC
TTAGATGAAGACACACCCCCAATAGTGTCACAATTTCCCGGGACCATGGCTAAACCTCCTGGATCAT
TA
GCCAGAAGCAGCAGCCTGTGCCGTTCACGCCGCAGCATTGTGCCGTCCTCGCCTCAGCCTCAGCGAGC
T
CAGCTTGCTCCACACGCCCCCCACCCGTCACACCCTCGGCACCCTCACCACCCGCAACACACACCACAC
TCC
TTGCCTTCCCCTGATCCAGATATCCTCTCAGTGTCAAGTTGCCCTGCGCTTTATCGAAATGAAGAGG
AG
GAAGAGGCCATTTACTTCTCTGCTGAAAAGCAATGGGAAGTGCCAGACACAGCTTCAGAATGTGACTC
C
TTAAATTCTTCCATTGGAAGGAAACAGTCTCCTCCTTTAAGCCTCGAGATATACCAAACATTATCTCCG
CGA
AAGATATCAAGAGATGAGGTGTCCCTAGAGGATTCCTCCCGAGGGGATTCGCCTGTAACTGTGGATG
TG
TCTTGGGGTTCTCCCGACTGTGTAGGTCTGACAGAAACTAAGAGTATGATCTTCAGTCCTGCAAGCAA
A
GTGTACAATGGCATTTTGGAGAAATCCTGTAGCATGAACCAGCTTTCCAGTGGCATCCCGGTGCCTAAA
CCT
CGCCACACATCATGTTCCTCAGCTGGCAACGACAGTAAACCAGTTCAGGAAGCCCCAAGTGTTGCCA
GA
ATAAGCAGCATCCCACATGACCTTTGTCATAATGGAGAGAAAAGCAAAAAGCCATCAAAAATCAAAAG
C
CTTTTTAAGAAGAAATCTAAGTGA


Translation (754 aa):
MLVLGLLVAGAADGCELVPRHLRGRRATGSAATAASSPAAAAGDSPALMTDPCMSLSPPCFTEEDRFSLE
A
LQTIHKQMDDDKDGGIEVEESDE
FIREDMKYKDATNKHSHLHREDKHITIEDLWKRWKTSEVHNWTLED
T
LQWLIEFVELPQYEKNFRDNNVKGTTLP
RIAVHEPSFMISQLKISDRSHRQKLQLKALDVVLFGPLTRP
P
HNWMKDFILTVSIVIGVGGCWFAYTQNKTSKEHVAKMMKDLESLQTAEQSLMDLQE
RLEKAQEENRNVA
V
EKQNLERKMMDEINYAKEEACRLRELREGAECELSRRQYAEQELEQ
VRMALKKAEKEFELRSSWSVPDA
L
QKWLQLTHEVEVQYYNIKRQNAEMQLAIAKDE
VAASYLIQAEKIKKKRSTVFGTLHVAHSSSLDEVDHK
I
LEA
KKALSELTTCLRERLFRWQQIEKICGFQIAHNSGLPSLTSSLYSDHSWVVMPRVSIPPYPIAGGVD
D
LDEDTPPIVSQFP
GTMAKPPGSLARSSSLCRSRRSIVPSSPQPQRAQLAPHAPHPSHPRHPHHPQHTPH
S
LPSPDPDILSVSSCPALYRNEEEEEAIYFSAEKQ
WEVPDTASECDSLNSSIGRKQSPPLSLEIYQTLSP
R
KISRDEVSLEDSSRGDSPVTVDVSWGSPDCVGLTETKSMIFSPASKVYNGILEKSCSMNQLSSGIPVPK
P
RHTSCSSAGNDSKPVQEAPSVARISSIPHDLCHNGEKSKKPSKIKSLFKKKSK




Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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