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Report for CCDS54744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54744.1 Public Homo sapiens 4 CC2D2A 24 110 108 CCDS HistoryNCBI Gene:57545Re-query CCDS DB by CCDS ID:54744.1Re-query CCDS DB by GeneID:57545See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54744.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000515124.6 ENSP00000424368.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515124.6Link to Ensembl Protein Viewer:ENSP00000424368.1Re-query CCDS DB by Nucleotide ID:ENST00000515124Re-query CCDS DB by Protein ID:ENSP00000424368
Original member Current member EBI ENST00000507954.5 ENSP00000427221.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507954.5Link to Ensembl Protein Viewer:ENSP00000427221.1Re-query CCDS DB by Nucleotide ID:ENST00000507954Re-query CCDS DB by Protein ID:ENSP00000427221
Original member Current member NCBI NM_001164720.3 NP_001158192.1 Accepted alive Link to Nucleotide Sequence:NM_001164720.3Link to Protein Sequence:NP_001158192.1Re-query CCDS DB by Nucleotide ID:NM_001164720Re-query CCDS DB by Protein ID:NP_001158192Link to BLAST:NP_001158192.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158192.1 111 Q9P2K1-6 111 100% 0 0

Chromosomal Locations for CCDS 54744.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 15475933 15475971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15478723 15478806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15480704 15480827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15481197 15481285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (336 nt):
ATGAATCCCAGGGAAGAAAAAGTAAAAATAATTACAGAGGAGTTCATTGAAAATGATGAGGATGCAGACA
TGGGAAGACAGAATAAGAACTCAAAGGTTCGAAGACAGCCAAGAAAGAAACAGCCACCAACTGCTGTCCC
CAAGGAAATGGTGTCCGAAAAATCCCACCTTGGCAACCCCCAGGAGCCTGTGCAGGAGGAGCCCAAGACC
CGCCTCCTGAGTATGACAGTCCGGAGAGGCCCACGGAGAGAGCTGGTTGTTAAAAAGAGCCTGGGCAGGC
CAGGCACGGTGACTCACGTCTGTAATCCCAGCACTTTGGAAGGCCGAGGCGGGTAA

Translation (111 aa):
MNPREEKVKIITEEFIENDEDADMGRQNKNSKVRRQPRKKQPPTAVPKEMVSEKSHLGNPQEPVQEEPKT
RLLSMTVRRGPRRELVVKKSLGRPGTVTHVCNPSTLEGRGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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