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Report for CCDS54716.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54716.1 Public Homo sapiens 4 SH3BP2 24 110 108 CCDS HistoryNCBI Gene:6452Re-query CCDS DB by CCDS ID:54716.1Re-query CCDS DB by GeneID:6452See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54716.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000511747.6 ENSP00000424846.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511747.6Link to Ensembl Protein Viewer:ENSP00000424846.2Re-query CCDS DB by Nucleotide ID:ENST00000511747Re-query CCDS DB by Protein ID:ENSP00000424846
Original member Current member NCBI NM_001145856.2 NP_001139328.1 Accepted alive Link to Nucleotide Sequence:NM_001145856.2Link to Protein Sequence:NP_001139328.1Re-query CCDS DB by Nucleotide ID:NM_001145856Re-query CCDS DB by Protein ID:NP_001139328Link to BLAST:NP_001139328.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139328.1 618 P78314-4 618 100% 0 0

Chromosomal Locations for CCDS 54716.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 2818224 2818390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2820614 2820753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2822935 2823037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2824613 2824730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2825126 2825196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2827230 2827318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2827606 2827674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2829493 2830147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2831571 2831679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2831923 2831978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2832331 2832412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2832990 2833049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2833697 2833834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1857 nt):
ATGGCGGGCTCCGGGCCGCGGCCGCGGAGCTGGGGCCGGCGGGAGGCGGGCGCCCGGGACGAGGCGGCGG
CGGCCGGGGGACGCGGCCCGGGGCCGTGCCGGTGCTCGCAGGGGAGGCGGGCGTGGATCGCCCCGGGGAA
GCCGGCCATGCCCGCCGCGTGGACGCCCTTCATGGCGGCTGAAGAGATGCATTGGCCTGTCCCTATGAAG
GCCATTGGTGCCCAGAACCTGCTAACCATGCCTGGGGGCGTGGCCAAGGCTGGCTACCTGCACAAGAAGG
GCGGTACCCAGCTGCAGCTGCTGAAATGGCCCCTGCGCTTTGTCATCATCCACAAACGCTGCGTCTACTA
CTTCAAGAGTAGCACCTCTGCCTCCCCGCAGGGCGCCTTCTCCCTGAGTGGCTATAACCGGGTGATGCGG
GCGGCTGAGGAGACCACGTCCAACAACGTTTTCCCCTTCAAGATCATCCATATCAGCAAGAAGCACCGCA
CGTGGTTCTTCTCGGCCTCCTCCGAGGAGGAGCGCAAGAGCTGGATGGCCTTGCTGCGCAGGGAGATTGG
CCACTTCCACGAAAAGAAAGACCTGCCCTTGGACACCAGCGACTCCAGCTCGGACACAGACAGCTTCTAC
GGCGCAGTTGAGCGGCCTGTGGATATCAGCCTTTCCCCGTACCCCACGGACAATGAAGACTATGAGCACG
ACGATGAGGATGACTCCTACCTGGAGCCTGACTCCCCGGAGCCCGGAAGGCTTGAGGATGCCCTGATGCA
CCCACCGGCTTACCCACCACCCCCAGTGCCCACGCCCAGGAAGCCAGCCTTCTCTGACATGCCCCGGGCC
CACTCCTTTACCTCCAAGGGCCCCGGTCCCCTACTGCCACCCCCGCCCCCTAAGCACGGCCTCCCAGATG
TTGGCCTGGCTGCTGAGGACTCCAAGAGGGACCCACTGTGCCCGAGGCGGGCTGAGCCTTGCCCCAGGGT
ACCTGCTACCCCCCGAAGGATGAGCGATCCCCCTCTGAGCACCATGCCCACCGCACCCGGCCTCCGGAAA
CCCCCTTGCTTCCGGGAGAGTGCCAGCCCCAGCCCGGAGCCCTGGACCCCTGGCCACGGGGCCTGCTCCA
CTTCCAGTGCTGCCATCATGGCCACTGCCACCTCCAGAAACTGTGACAAACTCAAGTCCTTCCACCTGTC
CCCCCGAGGACCACCCACATCTGAGCCCCCACCTGTGCCAGCCAACAAGCCCAAGTTCCTGAAGATAGCT
GAAGAGGACCCCCCAAGGGAGGCAGCCATGCCCGGACTCTTTGTGCCCCCCGTGGCTCCCCGGCCTCCTG
CGCTGAAGCTGCCAGTGCCTGAGGCCATGGCGCGGCCCGCAGTCCTGCCCAGGCCAGAGAAGCCGCAGCT
CCCGCACCTCCAGCGATCACCCCCCGATGGGCAGAGTTTCAGGAGCTTCTCCTTTGAAAAGCCCCGGCAA
CCCTCACAGGCTGACACTGGCGGGGACGACTCGGACGAGGACTATGAGAAGGTGCCACTGCCCAACTCGG
TCTTCGTCAACACCACGGAGTCCTGCGAAGTGGAAAGGTTGTTCAAGGCTACAAGCCCCCGGGGAGAGCC
CCAGGATGGACTCTACTGCATCCGGAACTCCTCTACCAAGTCGGGGAAGGTCCTGGTTGTGTGGGACGAA
ACCTCTAACAAAGTGAGGAACTATCGCATTTTTGAGAAGGACTCTAAGTTCTACCTGGAGGGCGAGGTCC
TGTTTGTGAGTGTGGGCAGCATGGTGGAGCACTACCACACCCACGTGCTGCCCAGCCACCAGAGCCTGCT
GCTGCGGCACCCCTACGGCTACACTGGGCCTAGGTGA

Translation (618 aa):
MAGSGPRPRSWGRREAGARDEAAAAGGRGPGPCRCSQGRRAWIAPGKPAMPAAWTPFMAAEEMHWPVPMK
AIGAQNLLTMPGGVAKAGYLHKKGGTQLQLLKWPLRFVIIHKRCVYYFKSSTSASPQGAFSLSGYNRVMR
AAEETTSNNVFPFKIIHISKKHRTWFFSASSEEERKSWMALLRREIGHFHEKKDLPLDTSDSSSDTDSFY
GAVERPVDISLSPYPTDNEDYEHDDEDDSYLEPDSPEPGRLEDALMHPPAYPPPPVPTPRKPAFSDMPRA
HSFTSKGPGPLLPPPPPKHGLPDVGLAAEDSKRDPLCPRRAEPCPRVPATPRRMSDPPLSTMPTAPGLRK
PPCFRESASPSPEPWTPGHGACSTSSAAIMATATSRNCDKLKSFHLSPRGPPTSEPPPVPANKPKFLKIA
EEDPPREAAMPGLFVPPVAPRPPALKLPVPEAMARPAVLPRPEKPQLPHLQRSPPDGQSFRSFSFEKPRQ
PSQADTGGDDSDEDYEKVPLPNSVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDE
TSNKVRNYRIFEKDSKFYLEGEVLFVSVGSMVEHYHTHVLPSHQSLLLRHPYGYTGPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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