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Report for CCDS54623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54623.1 Public Homo sapiens 3 CD200R1 24 110 108 CCDS HistoryNCBI Gene:131450Re-query CCDS DB by CCDS ID:54623.1Re-query CCDS DB by GeneID:131450See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54623.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000490004.1 ENSP00000418801.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000490004.1Link to Ensembl Protein Viewer:ENSP00000418801.1Re-query CCDS DB by Nucleotide ID:ENST00000490004Re-query CCDS DB by Protein ID:ENSP00000418801
Original member Current member NCBI NM_138940.3 NP_620386.1 Accepted alive Link to Nucleotide Sequence:NM_138940.3Link to Protein Sequence:NP_620386.1Re-query CCDS DB by Nucleotide ID:NM_138940Re-query CCDS DB by Protein ID:NP_620386Link to BLAST:NP_620386.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620386.1 165 Q8TD46-3 165 100% 0 0

Chromosomal Locations for CCDS 54623.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 112929143 112929507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112931106 112931171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112974791 112974857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGCTCTGCCCTTGGAGAACTGCTAACCTAGGGCTACTGTTGATTTTGACTATCTTCTTAGTGGCCGCTT
CAAGCAGTTTATGTATGGATGAAAAACAGATTACACAGAACTACTCGAAAGTACTCGCAGAAGTTAACAC
TTCATGGCCTGTAAAGATGGCTACAAATGCTGTGCTTTGTTGCCCTCCTATCGCATTAAGAAATTTGATC
ATAATAACATGGGAAATAATCCTGAGAGGCCAGCCTTCCTGCACAAAAGCCTACAAGAAAGAAACAAATG
AGACCAAGGAAACCAACTGTACTGATGAGAGAATAACCTGGGTCTCCAGACCTGATCAGAATTCGGACCT
TCAGATTCGTACCGTGGCCATCACTCATGACGGGTATTACAGATGCATAATGGTAACACCTGATGGGAAT
TTCCATCGTGGATATCACCTCCAAGTGTTAGGTAAGGAGCATCATATATTGAGGTATTTCACATCACCAG
ATTTGTGA

Translation (165 aa):
MLCPWRTANLGLLLILTIFLVAASSSLCMDEKQITQNYSKVLAEVNTSWPVKMATNAVLCCPPIALRNLI
IITWEIILRGQPSCTKAYKKETNETKETNCTDERITWVSRPDQNSDLQIRTVAITHDGYYRCIMVTPDGN
FHRGYHLQVLGKEHHILRYFTSPDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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