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Report for CCDS54620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54620.1 Public Homo sapiens 3 C3orf52 24 110 108 CCDS HistoryNCBI Gene:79669Re-query CCDS DB by CCDS ID:54620.1Re-query CCDS DB by GeneID:79669See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54620.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000431717.6 ENSP00000399392.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000431717.6Link to Ensembl Protein Viewer:ENSP00000399392.2Re-query CCDS DB by Nucleotide ID:ENST00000431717Re-query CCDS DB by Protein ID:ENSP00000399392
Original member Current member NCBI NM_001171747.2 NP_001165218.1 Accepted alive Link to Nucleotide Sequence:NM_001171747.2Link to Protein Sequence:NP_001165218.1Re-query CCDS DB by Nucleotide ID:NM_001171747Re-query CCDS DB by Protein ID:NP_001165218Link to BLAST:NP_001165218.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165218.1 250 Q5BVD1-3 250 100% 0 0

Chromosomal Locations for CCDS 54620.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 112086408 112086545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112093360 112093489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112102838 112102965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112116642 112116998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGACCTGGCCCAACCCTCACAGCCAGTAGACGAGCTGGAGCTCTCGGTGCTCGAGCGGCAGCCAGAAG
AGAACACGCCTCTCAATGGTGCCGACAAGGTCTTCCCTTCTTTGGACGAGGAGGTCCCCCCGGCCGAGGC
TAACAAGGAAAGCCCCTGGAGCTCCTGTAATAAGAATGTGGTTGGAAGATGCAAACTGTGGATGATCATC
ACCTCCATTTTCCTAGGTGTCATTACAGTGATCATCATAGGCTTATGTCTTGCTGCAGTAACTTATGTTG
ATGAAGATGAAAATGAAATACTTGAATTATCATCAAACAAAACATTCTTCATCATGCTGAAGATTCCAGA
GGAGTGTGTTGCTGAAGAGGAATTGCCTCACCTGCTCACCGAAAGGAATGAAGTGATGGAGGCTGGTCTC
TGTCTGAAAGCAGTGCTCTACCAAGTCCTGGAGATGAAGGGAATTCACTCTGTTTTGCAGAAAAGATTCT
GTGGATTAATACAGAAGCACCAGCAACACCAGAGGGGTGGAGACTCCTTTCTCTCCCGATTCTACAGTCT
GGCTCTAAGCCCAGTAAAACAGCTCCCGAGCACTGCTTCAGCTGGGTCCAGTCTTGACAAAGGCAGGAAG
CCAGCTAGGGTGGGGGCGATAGGGTCAGCGGGTATGTCCCACTGTTGGAGGTCACTGGTATTCTGTTTGT
TTTTGTTTTGTTTCGTTTTGTTTTTTGAGACAGGGTCTCGTTCTGTCGCTTAG

Translation (250 aa):
MDLAQPSQPVDELELSVLERQPEENTPLNGADKVFPSLDEEVPPAEANKESPWSSCNKNVVGRCKLWMII
TSIFLGVITVIIIGLCLAAVTYVDEDENEILELSSNKTFFIMLKIPEECVAEEELPHLLTERNEVMEAGL
CLKAVLYQVLEMKGIHSVLQKRFCGLIQKHQQHQRGGDSFLSRFYSLALSPVKQLPSTASAGSSLDKGRK
PARVGAIGSAGMSHCWRSLVFCLFLFCFVLFFETGSRSVA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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