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Report for CCDS54604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54604.1 Public Homo sapiens 3 SLC25A26 24 110 108 CCDS HistoryNCBI Gene:115286Re-query CCDS DB by CCDS ID:54604.1Re-query CCDS DB by GeneID:115286See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54604.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336733.10 ENSP00000336801.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336733.10Link to Ensembl Protein Viewer:ENSP00000336801.5Re-query CCDS DB by Nucleotide ID:ENST00000336733Re-query CCDS DB by Protein ID:ENSP00000336801
Original member Current member EBI ENST00000686511.1 ENSP00000509933.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000686511.1Link to Ensembl Protein Viewer:ENSP00000509933.1Re-query CCDS DB by Nucleotide ID:ENST00000686511Re-query CCDS DB by Protein ID:ENSP00000509933
Original member Current member EBI ENST00000691461.1 ENSP00000510022.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691461.1Link to Ensembl Protein Viewer:ENSP00000510022.1Re-query CCDS DB by Nucleotide ID:ENST00000691461Re-query CCDS DB by Protein ID:ENSP00000510022
Original member Current member NCBI NM_001164796.1 NP_001158268.1 Accepted alive Link to Nucleotide Sequence:NM_001164796.1Link to Protein Sequence:NP_001158268.1Re-query CCDS DB by Nucleotide ID:NM_001164796Re-query CCDS DB by Protein ID:NP_001158268Link to BLAST:NP_001158268.1
Original member Current member NCBI NM_001350993.1 NP_001337922.1 Accepted alive Link to Nucleotide Sequence:NM_001350993.1Link to Protein Sequence:NP_001337922.1Re-query CCDS DB by Nucleotide ID:NM_001350993Re-query CCDS DB by Protein ID:NP_001337922Link to BLAST:NP_001337922.1
Original member Current member NCBI NM_001400711.1 NP_001387640.1 Accepted alive Link to Nucleotide Sequence:NM_001400711.1Link to Protein Sequence:NP_001387640.1Re-query CCDS DB by Nucleotide ID:NM_001400711Re-query CCDS DB by Protein ID:NP_001387640Link to BLAST:NP_001387640.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158268.1 186 Q70HW3-2 186 100% 0 0
NP_001337922.1 186 Q70HW3-2 186 100% 0 0
NP_001387640.1 186 Q70HW3-2 186 100% 0 0

Chromosomal Locations for CCDS 54604.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 66243277 66243312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66262051 66262155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66263332 66263379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66346364 66346408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66362860 66362929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66369478 66369542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66370529 66370602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66377690 66377807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGAAACATATGTTGGCTGCCTCTGCTGGAGAAGTGGTTGCCTGCCTGATTCGAGTTCCATCTGAAGTGG
TTAAGCAGAGGGCACAGGTATCTGCTTCTACAAGAACATTTCAGATTTTCTCTAACATCTTATATGAAGA
GGGTATCCAAGGGTTGTATCGAGGCTATAAAAGCACAGTTTTAAGAGAGATTCCTTTTTCTTTGGTCCAG
TTTCCCTTATGGGAGTCCTTAAAAGCCCTCTGGTCCTGGAGGCAGGATCATGTGGTGGATTCTTGGCAGT
CAGCAGTCTGTGGAGCTTTTGCAGGTGGATTTGCCGCTGCAGTCACCACCCCTCTAGACGTGGCAAAGAC
AAGAATTACGCTGGCAAAGGCTGGCTCCAGCACTGCTGATGGGAATGTGCTCTCTGTCCTGCATGGGGTC
TGGCGGTCACAGGGGCTGGCAGGATTATTTGCAGGTGTCTTCCCTCGAATGGCAGCCATCAGTCTGGGAG
GTTTCATCTTTCTGGGGGCTTATGACCGAACGCACAGCTTGCTGTTGGAAGTTGGCAGAAAGAGTCCTTG
A

Translation (186 aa):
MKHMLAASAGEVVACLIRVPSEVVKQRAQVSASTRTFQIFSNILYEEGIQGLYRGYKSTVLREIPFSLVQ
FPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRITLAKAGSSTADGNVLSVLHGV
WRSQGLAGLFAGVFPRMAAISLGGFIFLGAYDRTHSLLLEVGRKSP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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