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Report for CCDS54592.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54592.1 Public Homo sapiens 3 POC1A 24 110 108 CCDS HistoryNCBI Gene:25886Re-query CCDS DB by CCDS ID:54592.1Re-query CCDS DB by GeneID:25886See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54592.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394970.6 ENSP00000378421.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394970.6Link to Ensembl Protein Viewer:ENSP00000378421.2Re-query CCDS DB by Nucleotide ID:ENST00000394970Re-query CCDS DB by Protein ID:ENSP00000378421
Original member Current member NCBI NM_001161580.2 NP_001155052.1 Accepted alive Link to Nucleotide Sequence:NM_001161580.2Link to Protein Sequence:NP_001155052.1Re-query CCDS DB by Nucleotide ID:NM_001161580Re-query CCDS DB by Protein ID:NP_001155052Link to BLAST:NP_001155052.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155052.1 359 Q8NBT0-2 359 100% 0 0

Chromosomal Locations for CCDS 54592.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52075887 52075985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52122379 52122477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52125113 52125181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52138169 52138302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52145846 52145961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52146988 52147095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52149210 52149389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52149816 52149987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52151016 52151100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52154355 52154372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGCTGCGCCCTGCGCGGAGGACCCCTCGCTGGAAAGGCATTTTAAGGGCCACCGAGATGCAGTTACCT
GTGTGGACTTCAGTATCAACACAAAGCAGCTGGCCAGTGGCTCCATGGACTCATGCCTCATGGTCTGGCA
CATGAAGCCGCAGTCACGCGCCTACCGCTTCACTGGCCACAAGGATGCCGTCACCTGTGTGAACTTCTCT
CCTTCGGGACACCTGCTTGCTTCCGGCTCCCGAGACAAGACTGTCCGCATCTGGGTACCCAATGTCAAAG
GTGAGTCCACTGTGTTTCGTGCACACACAGCCACAGTGAGGAGTGTCCACTTCTGCAGTGATGGCCAGTC
CTTCGTGACAGCCTCTGACGACAAGACAGTCAAAGTGTGGGCAACTCATCGCCAGAAATTCCTGTTCTCC
CTGAGCCAGCATATCAACTGGGTCCGCTGTGCCAAGTTCTCCCCCGACGGGCGGCTCATCGTGTCTGCCA
GTGATGACAAGACTGTTAAGCTGTGGGACAAGAGCAGCCGGGAATGTGTCCACTCGTATTGTGAGCATGG
CGGCTTTGTCACCTATGTGGACTTCCACCCCAGTGGGACGTGCATTGCCGCTGCCGGCATGGACAACACA
GTGAAGGTGTGGGACGTGCGGACTCACCGGCTGCTGCAGCATTATCAGTTGCACAGTGCAGCAGTGAACG
GGCTCTCTTTCCACCCGTCGGGAAACTACCTGATCACAGCCTCCAGTGACTCAACCCTGAAGATCCTGGA
CCTGATGGAGGGCCGGCTGCTCTACACACTCCACGGGCATCAGGGACCAGCCACCACTGTTGCCTTTTCA
AGAACGGGGGAGTATTTTGCTTCTGGAGGCTCTGATGAACAAGTGATGGTTTGGAAGAGTAACTTTGATA
TTGTTGATCATGGAGAAGTCACGAAAGTGCCGAGGCCCCCAGCCACACTGGCCAGCTCCATGGGGAATCT
GACAGTCTCCATTCTGGAGCAGCGGTTGACACTGACAGAAGACAAGCTGAAGCAGTGTCTGGAGAACCAG
CAGCTAATCATGCAGAGAGCAACACCATGA

Translation (359 aa):
MAAPCAEDPSLERHFKGHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFS
PSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFS
LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNT
VKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFS
RTGEYFASGGSDEQVMVWKSNFDIVDHGEVTKVPRPPATLASSMGNLTVSILEQRLTLTEDKLKQCLENQ
QLIMQRATP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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