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Report for CCDS5458.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5458.2 Public Homo sapiens 7 VPS41 24 110 108 CCDS HistoryNCBI Gene:27072Re-query CCDS DB by CCDS ID:5458.2Re-query CCDS DB by GeneID:27072See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5458.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395969.6 ENSP00000379297.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395969.6Link to Ensembl Protein Viewer:ENSP00000379297.2Re-query CCDS DB by Nucleotide ID:ENST00000395969Re-query CCDS DB by Protein ID:ENSP00000379297
Original member Current member NCBI NM_080631.4 NP_542198.2 Accepted alive Link to Nucleotide Sequence:NM_080631.4Link to Protein Sequence:NP_542198.2Re-query CCDS DB by Nucleotide ID:NM_080631Re-query CCDS DB by Protein ID:NP_542198Link to BLAST:NP_542198.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542198.2 829 P49754-3 829 100% 0 0

Chromosomal Locations for CCDS 5458.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 38726246 38726326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38726909 38726988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38728542 38728586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38728692 38728791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38741985 38742121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38743402 38743542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38745559 38745613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38752176 38752313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38754702 38754752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38754895 38754936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38756838 38756982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38758354 38758481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38763455 38763547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38765580 38765661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38767537 38767598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38771198 38771254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38772522 38772637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38774115 38774244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38776679 38776776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38789801 38789867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38795465 38795611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38796745 38796864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38817817 38817882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38821203 38821265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38862545 38862622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38869146 38869253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38898091 38898129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38909154 38909174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2490 nt):
ATGGCGGAAGCAGAGGAGCAGGAAACTGGGTCCCTTGAAGAATCTACAGATGAGTCTGAGGAAGAAGAGA
GCGAAGAGGAACCCAAGCTGAAGTATGAAAGGCTTTCCAATGGGGTAACTGAAATACTTCAGAAGGATGC
AGCTAGCTGCATGACAGTCCATGACAAGTTTTTGGCATTGGGCACACATTATGGCAAGGTTTATTTACTT
GATGTCCAGGGGAACATCACTCAGAAGTTTGATGTAGTGCAGGTATTTGGACTGTATTCTGGAGAAGAAT
TTCACGAGACTTTTGACTGTCCCATTAAAATTATTGCTGTGCACCCACATTTCGTGAGATCCAGTTGCAA
GCAGTTTGTGACCGGAGGGAAGAAGCTGCTACTGTTTGAACGGTCTTGGATGAACAGATGGAAGTCTGCT
GTTCTGCATGAAGGGGAAGGGAACATAAGGAGTGTGAAGTGGAGAGGCCATCTGATTGCTTGGGCCAATA
ATATGGGTGTGAAGATTTTTGACATCATCTCAAAGCAAAGAATCACCAATGTGCCCCGGGATGATATAAG
TCTTCGCCCAGACATGTATCCCTGCAGCCTCTGCTGGAAGGACAATGTGACACTGATTATTGGCTGGGGG
ACTTCTGTCAAGGTGTGCTCAGTGAAGGAACGGCATGCCAGTGAAATGAGGGATTTGCCAAGTCGATATG
TTGAAATAGTGTCTCAGTTTGAAACTGAATTCTACATCAGTGGACTTGCACCTCTCTGTGATCAGCTTGT
TGTACTTTCGTATGTAAAGGAGATTTCAGAAAAAACGGAAAGAGAATACTGTGCCAGGCCTAGACTGGAC
ATCATCCAGCCACTTTCTGAGACTTGTGAAGAGATCTCTTCTGATGCTTTGACAGTCAGAGGCTTTCAGG
AGAATGAATGTAGAGATTATCATTTAGAATACTCTGAAGGGGAATCACTTTTTTACATCGTGAGTCCGAG
AGATGTTGTAGTGGCCAAGGAACGAGACCAAGATGATCACATTGACTGGCTCCTTGAAAAGAAGAAATAT
GAAGAAGCATTGATGGCAGCTGAAATTAGCCAAAAAAATATTAAAAGACATAAGATTCTGGATATTGGCT
TGGCATATATAAATCACCTGGTGGAGAGAGGAGACTATGACATAGCAGCACGCAAATGCCAGAAAATTCT
TGGGAAAAATGCAGCACTCTGGGAATATGAAGTTTATAAATTTAAAGAAATTGGACAGCTTAAGGCTATT
AGTCCTTATTTGCCAAGAGGTGATCCAGTTCTGAAACCACTCATCTATGAAATGATCTTACATGAATTTT
TGGAGAGTGATTATGAGGGTTTTGCCACATTGATCCGAGAATGGCCTGGAGATCTGTATAATAATTCAGT
CATAGTTCAAGCAGTTCGGGATCATTTGAAGAAAGATAGTCAGAACAAGACTTTACTTAAAACCCTGGCA
GAATTGTACACCTATGACAAGAACTATGGCAATGCTCTGGAAATATACTTAACATTAAGACATAAAGACG
TTTTTCAGTTGATCCACAAGCATAATCTTTTCAGTTCTATCAAGGATAAAATTGTTTTATTAATGGATTT
TGATTCAGAGAAAGCTGTTGACATGCTTTTGGACAATGAAGATAAAATTTCAATTAAAAAGGTAGTGGAA
GAATTGGAAGACAGACCAGAGCTACAGCATGTGTATTTGCATAAGCTTTTCAAGAGAGACCACCATAAGG
GGCAGCGTTACCATGAAAAACAGATCAGTCTTTATGCTGAATATGATCGACCAAACTTACTTCCCTTTCT
CCGAGACAGTACCCATTGCCCACTTGAAAAGGCTCTTGAGATCTGTCAACAGAGAAACTTTGTAGAAGAG
ACAGTTTATCTTCTGAGCCGAATGGGTAATAGCCGAAGTGCCCTGAAGATGATTATGGAGGAATTACATG
ATGTTGATAAAGCAATCGAATTTGCCAAGGAGCAAGATGATGGAGAGCTGTGGGAAGATTTGATTTTATA
TTCCATTGACAAACCACCATTTATTACTGGCTTGTTAAACAACATTGGCACACATGTTGACCCAATTCTA
CTGATTCACCGTATTAAGGAAGGAATGGAGATCCCCAATTTGAGAGATTCCTTGGTTAAAATTCTGCAAG
ACTACAATTTGCAAATTCTGCTTCGTGAAGGCTGCAAGAAGATTCTCGTAGCTGACTCTTTGTCCTTACT
GAAGAAAATGCACCGAACTCAAATGAAAGGTGTTCTTGTTGATGAGGAGAACATCTGTGAGTCGTGCCTT
TCCCCTATTCTTCCATCAGATGCAGCTAAGCCCTTCAGCGTGGTGGTCTTCCATTGCCGGCACATGTTCC
ACAAGGAGTGCCTGCCCATGCCCAGCATGAACTCTGCTGCACAGTTCTGCAACATCTGCAGTGCTAAGAA
CCGTGGACCAGGAAGTGCAATTTTGGAGATGAAAAAATAG

Translation (829 aa):
MAEAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLL
DVQGNITQKFDVVQVFGLYSGEEFHETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERSWMNRWKSA
VLHEGEGNIRSVKWRGHLIAWANNMGVKIFDIISKQRITNVPRDDISLRPDMYPCSLCWKDNVTLIIGWG
TSVKVCSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEISEKTEREYCARPRLD
IIQPLSETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKERDQDDHIDWLLEKKKY
EEALMAAEISQKNIKRHKILDIGLAYINHLVERGDYDIAARKCQKILGKNAALWEYEVYKFKEIGQLKAI
SPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRDHLKKDSQNKTLLKTLA
ELYTYDKNYGNALEIYLTLRHKDVFQLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVE
ELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEE
TVYLLSRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPIL
LIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCL
SPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAAQFCNICSAKNRGPGSAILEMKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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