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Report for CCDS54559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54559.1 Public Homo sapiens 3 OSBPL10 24 110 108 CCDS HistoryNCBI Gene:114884Re-query CCDS DB by CCDS ID:54559.1Re-query CCDS DB by GeneID:114884See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54559.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000438237.6 ENSP00000406124.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438237.6Link to Ensembl Protein Viewer:ENSP00000406124.2Re-query CCDS DB by Nucleotide ID:ENST00000438237Re-query CCDS DB by Protein ID:ENSP00000406124
Original member Current member NCBI NM_001174060.2 NP_001167531.1 Accepted alive Link to Nucleotide Sequence:NM_001174060.2Link to Protein Sequence:NP_001167531.1Re-query CCDS DB by Nucleotide ID:NM_001174060Re-query CCDS DB by Protein ID:NP_001167531Link to BLAST:NP_001167531.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167531.1 700 Q9BXB5-2 700 100% 0 0

Chromosomal Locations for CCDS 54559.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 31662072 31662116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31664079 31664232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31668642 31668824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31670797 31670983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31683634 31684114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31702359 31702508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31733257 31733411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31747910 31748120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31876433 31876512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31879655 31879830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31980899 31981179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2103 nt):
ATGGAGAGGGCAGTCCAGGGCACAGACGGCGGCGGGGGTAGCAACAGCAGCAGCCGCAGCAGCAGCCGTG
CTACCTCGGCGGGCTCCTCGCCCTCCTGCTCTCTGGCGGGCCGGGGGGTCTCCAGCCGGTCGGCGGCGGC
CGGGCTCGGCGGCGGGGGAAGCCGCAGCAGCCCGGGCTCTGTGGCCGCTAGCCCGTCCGGGGGAGGCGGC
CGCAGGAGGGAGCCGGCGCTCGAGGGCGTGCTCAGCAAATACACCAACCTCCTCCAGGGCTGGCAGAACA
GGTACTTCGTACTGGATTTCGAGGCTGGCATCCTGCAGTATTTTGTGAATGAGCAAAGCAAACACCAGAA
GCCTCGAGGAGTCCTGTCTTTATCTGGAGCCATAGTGTCCCTGAGCGATGAAGCTCCCCACATGCTGGTG
GTGTACTCTGCTAATGGAGAGATGTTTAAACTGAGAGCTGCTGATGCAAAAGAGAAACAATTCTGGGTGA
CTCAGCTTCGAGCTTGTGCCAAATACCACATGGAAATGAATTCTAAGATGATGAACCAGGTGGAAGGGCA
GCAGAAGAACCTTGTGCACGCCATTGAGTCCCTGCCAGGGTCCGGCCCCCTCACTGCCTTGGACCAGGAC
CTGCTGCTCCTGAAAGCTACCTCTGCTGCCACCCTCAGCTGCCTTGGGGAGTGCCTCAACTTGTTACAGC
AGAGTGTGCACCAGGCGGGCCAGCCCAGCCAGAAGCCAGGAGCCTCGGAAAACATCCTGGGATGGCACGG
GTCCAAGTCACATTCCACAGAGCAGCTGAAAAATGGGACACTTGGCTCTTTGCCATCAGCCAGTGCCAAC
ATAACCTGGGCAATTTTACCAAACTCTGCTGAAGACGAACAAACCTCACAGCCAGAGCCAGAGCCAAACT
CAGGCTCTGAATTGGTTTTGTCTGAAGATGAAAAAAGTGACAATGAAGATAAGGAAGAGACGGAATTGGG
CGTCATGGAGGATCAGCGTAGTATAATTCTTCATCTCATTTCACAACTCAAACTTGGAATGGATTTGACC
AAGGTGGTGCTTCCCACCTTTATCCTGGAGAAGCGATCTTTGCTGGAGATGTATGCAGATTTCATGGCGC
ACCCAGACCTACTGCTGGCCATCACCGCTGGGGCCACACCAGAGGAGAGAGTCATTTGCTTCGTTGAGTA
TTATCTCACAGCCTTTCACGAGGGCCGCAAGGGCGCTTTAGCCAAGAAGCCCTACAACCCCATCATAGGC
GAGACATTTCACTGCTCCTGGGAAGTTCCCAAGGACAGGGTCAAGCCTAAGAGGACTGCTTCCCGCTCTC
CTGCCAGCTGTCACGAACACCCAATGGCCGATGACCCTTCCAAAAGCTACAAACTAAGGTTTGTGGCTGA
GCAAGTGTCCCATCACCCACCCATCTCCTGCTTCTACTGTGAGTGCGAGGAGAAGAGACTGTGCGTCAAC
ACTCATGTATGGACCAAAAGCAAGTTCATGGGCATGTCCGTGGGGGTCTCTATGATAGGGGAAGGTGTGT
TGAGGCTCCTGGAACACGGGGAGGAGTACGTATTCACCCTGCCTAGTGCCTACGCCCGGTCCATTCTCAC
CATCCCGTGGGTGGAGCTCGGAGGAAAAGTCAGCATCAACTGTGCCAAGACTGGGTACTCAGCGACAGTG
ATATTCCACACGAAGCCTTTCTATGGAGGGAAAGTCCACAGGGTTACCGCAGAAGTGAAGCACAACCCAA
CCAACACCATTGTTTGTAAAGCCCATGGGGAATGGAATGGTACTTTAGAGTTCACCTACAACAATGGAGA
AACCAAAGTCATCGACACAACCACACTGCCAGTGTATCCCAAGAAGATCAGACCTCTTGAGAAGCAGGGA
CCCATGGAGTCCAGGAACCTCTGGCGGGAGGTGACCCGATACCTGCGGCTGGGGGACATTGACGCAGCCA
CCGAGCAGAAGCGGCACCTGGAGGAGAAGCAACGGGTGGAGGAACGGAAGCGCGAGAACCTCCGCACACC
ATGGAAGCCCAAATATTTTATCCAGGAGGGCGATGGCTGGGTATACTTCAATCCCCTCTGGAAAGCACAC
TGA

Translation (700 aa):
MERAVQGTDGGGGSNSSSRSSSRATSAGSSPSCSLAGRGVSSRSAAAGLGGGGSRSSPGSVAASPSGGGG
RRREPALEGVLSKYTNLLQGWQNRYFVLDFEAGILQYFVNEQSKHQKPRGVLSLSGAIVSLSDEAPHMLV
VYSANGEMFKLRAADAKEKQFWVTQLRACAKYHMEMNSKMMNQVEGQQKNLVHAIESLPGSGPLTALDQD
LLLLKATSAATLSCLGECLNLLQQSVHQAGQPSQKPGASENILGWHGSKSHSTEQLKNGTLGSLPSASAN
ITWAILPNSAEDEQTSQPEPEPNSGSELVLSEDEKSDNEDKEETELGVMEDQRSIILHLISQLKLGMDLT
KVVLPTFILEKRSLLEMYADFMAHPDLLLAITAGATPEERVICFVEYYLTAFHEGRKGALAKKPYNPIIG
ETFHCSWEVPKDRVKPKRTASRSPASCHEHPMADDPSKSYKLRFVAEQVSHHPPISCFYCECEEKRLCVN
THVWTKSKFMGMSVGVSMIGEGVLRLLEHGEEYVFTLPSAYARSILTIPWVELGGKVSINCAKTGYSATV
IFHTKPFYGGKVHRVTAEVKHNPTNTIVCKAHGEWNGTLEFTYNNGETKVIDTTTLPVYPKKIRPLEKQG
PMESRNLWREVTRYLRLGDIDAATEQKRHLEEKQRVEERKRENLRTPWKPKYFIQEGDGWVYFNPLWKAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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