NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5454.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5454.2 Public Homo sapiens 7 EPDR1 24 110 108 CCDS HistoryNCBI Gene:54749Re-query CCDS DB by CCDS ID:5454.2Re-query CCDS DB by GeneID:54749See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 5454.1
The coding region has been updated to shorten the N-terminus to one that is more supported by the available transcript data, and by conservation across several species, including fish and amphibians which have greater evolutionary distance.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5454.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000199448.9 ENSP00000199448.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000199448.9Link to Ensembl Protein Viewer:ENSP00000199448.4Re-query CCDS DB by Nucleotide ID:ENST00000199448Re-query CCDS DB by Protein ID:ENSP00000199448
Original member Current member NCBI NM_017549.5 NP_060019.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017549.5Link to Protein Sequence:NP_060019.2Re-query CCDS DB by Nucleotide ID:NM_017549Re-query CCDS DB by Protein ID:NP_060019Link to BLAST:NP_060019.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060019.2 224 Q9UM22-1 224 100% 0 0

Chromosomal Locations for CCDS 5454.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 37920940 37921208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37948840 37949048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37950200 37950396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGCCAGGACGCGCTCCCCTCCGCACCGTCCCGGGCGCCCTGGGTGCCTGGCTGCTGGGCGGCCTCTGGG
CCTGGACCCTGTGCGGCCTGTGCAGCCTGGGGGCGGTGGGAGCCCCGCGCCCGTGCCAGGCGCCGCAGCA
GTGGGAGGGGCGCCAGGTTATGTACCAGCAAAGTAGCGGGCGCAACAGCCGCGCCCTGCTCTCCTACGAC
GGGCTCAACCAGCGCGTGCGGGTGCTGGACGAGAGGAAGGCGCTGATCCCCTGCAAGAGATTATTTGAAT
ATATTTTGCTGTATAAGGATGGAGTGATGTTTCAGATTGACCAAGCCACCAAGCAGTGCTCAAAGATGAC
CCTGACACAGCCCTGGGATCCTCTTGACATTCCTCAAAACTCCACCTTTGAAGACCAGTACTCCATCGGG
GGGCCTCAGGAGCAGATCACCGTCCAGGAGTGGTCGGACAGAAAGTCAGCTAGATCCTATGAAACCTGGA
TTGGCATCTATACAGTCAAGGATTGCTATCCTGTCCAGGAAACCTTTACCATAAACTACAGTGTGATATT
GTCTACGCGGTTTTTTGACATCCAGCTGGGTATTAAAGACCCCTCGGTGTTTACCCCTCCAAGCACGTGC
CAGATGGCCCAACTGGAGAAGATGAGCGAAGACTGCTCCTGGTGA

Translation (224 aa):
MPGRAPLRTVPGALGAWLLGGLWAWTLCGLCSLGAVGAPRPCQAPQQWEGRQVMYQQSSGRNSRALLSYD
GLNQRVRVLDERKALIPCKRLFEYILLYKDGVMFQIDQATKQCSKMTLTQPWDPLDIPQNSTFEDQYSIG
GPQEQITVQEWSDRKSARSYETWIGIYTVKDCYPVQETFTINYSVILSTRFFDIQLGIKDPSVFTPPSTC
QMAQLEKMSEDCSW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH