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Report for CCDS54530.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54530.1 Public Homo sapiens 22 APOBEC3H 24 110 108 CCDS HistoryNCBI Gene:164668Re-query CCDS DB by CCDS ID:54530.1Re-query CCDS DB by GeneID:164668See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54530.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000401756.5 ENSP00000385741.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000401756.5Link to Ensembl Protein Viewer:ENSP00000385741.1Re-query CCDS DB by Nucleotide ID:ENST00000401756Re-query CCDS DB by Protein ID:ENSP00000385741
Original member Current member EBI ENST00000613677.4 ENSP00000483689.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613677.4Link to Ensembl Protein Viewer:ENSP00000483689.1Re-query CCDS DB by Nucleotide ID:ENST00000613677Re-query CCDS DB by Protein ID:ENSP00000483689
Original member Current member NCBI NM_001166003.3 NP_001159475.2 Accepted alive Link to Nucleotide Sequence:NM_001166003.3Link to Protein Sequence:NP_001159475.2Re-query CCDS DB by Nucleotide ID:NM_001166003Re-query CCDS DB by Protein ID:NP_001159475Link to BLAST:NP_001159475.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159475.2 200 Q6NTF7-1 200 100% 0 0

Chromosomal Locations for CCDS 54530.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 39100279 39100428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39101237 39101504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39101918 39102042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39102512 39102571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGCTCTGTTAACAGCCGAAACATTCCGCTTACAGTTTAACAACAAGCGCCGCCTCAGAAGGCCTTACT
ACCCGAGGAAGGCCCTCTTGTGTTACCAGCTGACGCCGCAGAATGGCTCCACGCCCACGAGAGGCTACTT
TGAAAACAAGAAAAAGTGCCATGCAGAAATTTGCTTTATTAACGAGATCAAGTCCATGGGACTGGACGAA
ACGCAGTGCTACCAAGTCACCTGTTACCTCACGTGGAGCCCCTGCTCCTCCTGTGCCTGGGAGCTGGTTG
ACTTCATCAAGGCTCACGACCATCTGAACCTGGGCATCTTCGCCTCCCGCCTGTACTACCACTGGTGCAA
GCCCCAGCAGAAGGGGCTGCGGCTTCTGTGTGGATCCCAGGTCCCGGTGGAGGTCATGGGCTTCCCAGAG
TTTGCTGACTGCTGGGAAAACTTTGTGGACCACGAGAAACCGCTTTCCTTCAACCCCTATAAGATGTTAG
AGGAGCTAGATAAAAACAGTCGAGCCATAAAGCGACGGCTTGAGAGGATAAAGATTCCAGGGGTACGTGC
GCAGGGTCGTTACATGGATATATTGTGTGATGCTGAGGTCTGA

Translation (200 aa):
MALLTAETFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGSTPTRGYFENKKKCHAEICFINEIKSMGLDE
TQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLYYHWCKPQQKGLRLLCGSQVPVEVMGFPE
FADCWENFVDHEKPLSFNPYKMLEELDKNSRAIKRRLERIKIPGVRAQGRYMDILCDAEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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