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Report for CCDS54355.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54355.1 Public Homo sapiens 2 MCFD2 24 110 108 CCDS HistoryNCBI Gene:90411Re-query CCDS DB by CCDS ID:54355.1Re-query CCDS DB by GeneID:90411See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54355.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000444761.6 ENSP00000394647.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000444761.6Link to Ensembl Protein Viewer:ENSP00000394647.2Re-query CCDS DB by Nucleotide ID:ENST00000444761Re-query CCDS DB by Protein ID:ENSP00000394647
Original member Current member NCBI NM_001171511.3 NP_001164982.1 Accepted alive Link to Nucleotide Sequence:NM_001171511.3Link to Protein Sequence:NP_001164982.1Re-query CCDS DB by Nucleotide ID:NM_001171511Re-query CCDS DB by Protein ID:NP_001164982Link to BLAST:NP_001164982.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164982.1 127 Q8NI22-3 127 100% 0 0

Chromosomal Locations for CCDS 54355.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 46905463 46905594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 46907810 46907969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 46941572 46941663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGCTCAGCGTCTGCAGCTGCCGGACCAGCTCCGGCATGCGGTCCCAGTGGCCCTCGGCGCGGCAGCGCT
CCAGCTCGCTCTCCACCTTCAGGCATATCATGGAGCATCTAGAAGGTGTCATCAACAAACCAGAGGCGGA
GATGTCGCCACAAGAATTGCAGCTCCATTACTTCAAAATGCATGATTATGATGGCAATAATTTGCTTGAT
GGCTTAGAACTCTCCACAGCCATCACTCATGTCCATAAGGAGGAAGGGAGTGAACAGGCACCACTAATGA
GTGAAGATGAACTGATTAACATAATAGATGGTGTTTTGAGAGATGATGACAAGAACAATGATGGATACAT
TGACTATGCTGAATTTGCAAAATCACTGCAGTAG

Translation (127 aa):
MLSVCSCRTSSGMRSQWPSARQRSSSLSTFRHIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLD
GLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAEFAKSLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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