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Report for CCDS54354.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54354.1 Public Homo sapiens 2 MCFD2 24 110 108 CCDS HistoryNCBI Gene:90411Re-query CCDS DB by CCDS ID:54354.1Re-query CCDS DB by GeneID:90411See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54354.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409913.5 ENSP00000386941.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409913.5Link to Ensembl Protein Viewer:ENSP00000386941.1Re-query CCDS DB by Nucleotide ID:ENST00000409913Re-query CCDS DB by Protein ID:ENSP00000386941
Original member Current member EBI ENST00000409147.1 ENSP00000387082.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409147.1Link to Ensembl Protein Viewer:ENSP00000387082.1Re-query CCDS DB by Nucleotide ID:ENST00000409147Re-query CCDS DB by Protein ID:ENSP00000387082
Original member Current member EBI ENST00000409800.5 ENSP00000387202.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409800.5Link to Ensembl Protein Viewer:ENSP00000387202.1Re-query CCDS DB by Nucleotide ID:ENST00000409800Re-query CCDS DB by Protein ID:ENSP00000387202
Original member Current member NCBI NM_001171509.3 NP_001164980.1 Accepted alive Link to Nucleotide Sequence:NM_001171509.3Link to Protein Sequence:NP_001164980.1Re-query CCDS DB by Nucleotide ID:NM_001171509Re-query CCDS DB by Protein ID:NP_001164980Link to BLAST:NP_001164980.1
Original member Current member NCBI NM_001171510.3 NP_001164981.1 Accepted alive Link to Nucleotide Sequence:NM_001171510.3Link to Protein Sequence:NP_001164981.1Re-query CCDS DB by Nucleotide ID:NM_001171510Re-query CCDS DB by Protein ID:NP_001164981Link to BLAST:NP_001164981.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164980.1 94 Q8NI22-2 94 100% 0 0
NP_001164981.1 94 Q8NI22-2 94 100% 0 0

Chromosomal Locations for CCDS 54354.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 46905463 46905594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 46907810 46907962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (285 nt):
ATGGAGCATCTAGAAGGTGTCATCAACAAACCAGAGGCGGAGATGTCGCCACAAGAATTGCAGCTCCATT
ACTTCAAAATGCATGATTATGATGGCAATAATTTGCTTGATGGCTTAGAACTCTCCACAGCCATCACTCA
TGTCCATAAGGAGGAAGGGAGTGAACAGGCACCACTAATGAGTGAAGATGAACTGATTAACATAATAGAT
GGTGTTTTGAGAGATGATGACAAGAACAATGATGGATACATTGACTATGCTGAATTTGCAAAATCACTGC
AGTAG

Translation (94 aa):
MEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIID
GVLRDDDKNNDGYIDYAEFAKSLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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