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Report for CCDS54336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54336.1 Public Homo sapiens 2 GAREM2 24 110 108 CCDS HistoryNCBI Gene:150946Re-query CCDS DB by CCDS ID:54336.1Re-query CCDS DB by GeneID:150946See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54336.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000401533.7 ENSP00000384593.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000401533.7Link to Ensembl Protein Viewer:ENSP00000384593.1Re-query CCDS DB by Nucleotide ID:ENST00000401533Re-query CCDS DB by Protein ID:ENSP00000384593
Original member Current member NCBI NM_001168241.2 NP_001161713.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001168241.2Link to Protein Sequence:NP_001161713.1Re-query CCDS DB by Nucleotide ID:NM_001168241Re-query CCDS DB by Protein ID:NP_001161713Link to BLAST:NP_001161713.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161713.1 874 Q75VX8-1 874 100% 0 0

Chromosomal Locations for CCDS 54336.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 26173221 26173332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26176344 26176484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26182967 26183097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26184233 26185276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26186189 26186358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26187231 26188257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2625 nt):
ATGGAGAAGCTGGCGGCCGGGCTGGCCGGCCTGCGCTGGAGCATGGGCGCCTTCCCGCTCGACCTCATCG
TCAGCCGCTGCCGCCTGCCCACGCTCGCCTGCCTTGGGCCAGGGGAGTACGCCGAGGGCGTCAGTGAGCG
AGACATCCTGCTCATCCACTCCTGCCGGCAGTGGACAACGGTGACAGCTCATACCCTGGAGGAGGGCCAC
TATGTCATCGGGCCCAAGATCGACATCCCCCTGCAGTACCCAGGGAAGTTCAAGCTCCTGGAACAGGCCC
GGGATGTGCGGGAGCCAGTGAGGTACTTCAGCAGCGTGGAGGAGGTGGCCAGTGTCTTCCCTGACCGCAT
CTTCGTGATGGAAGCCATCACCTTCAGCGTCAAGGTGGTGTCGGGCGAGTTCAGCGAGGACAGCGAGGTG
TACAACTTCACGCTGCATGCGGGCGACGAGCTCACTCTTATGGGCCAGGCGGAGATCCTGTGCGCCAAGA
CCACCAAGGAGCGCTCGCGCTTCACCACCCTCCTGCGAAAGCTGGGCCGGGCCGGGGCGCTGGCCGGGGT
GGGCGGCGGCGGCCCAGCGAGCGCGGGGGCCGCGGGAGGCACTGGCGGCGGGGGCGCCAGGCCGGTCAAA
GGCAAGATGCCCTGCCTCATCTGCATGAACCACCGCACCAACGAAAGCCTGAGCCTGCCCTTTCAGTGCC
AGGGCCGCTTCAGCACTCGCAGCCCGCTGGAGCTGCAGATGCAAGAGGGCGAGCACACGGTGCGCGCCAT
CATCGAGCGCGTGAGGCTGCCGGTGAACGTGCTGGTGCCCAGCCGGCCGCCGCGCAACCCCTACGACCTG
CACCCGGTGCGGGAGGGTCATTGCTACAAGCTGGTTAGCATCATCTCCAAGACGGTGGTGCTGGGGCTGG
CGCTGCGCCGCGAGGGCCCGGCGCCGCTGCACTTCCTGCTGCTCACGGACACGCCGCGCTTCGCGCTGCC
GCAGGGCCTGCTGGCCGGGGACCCGCGCGTCGAGCGCCTGGTGCGCGACAGCGCCTCCTACTGCCGCGAG
CGCTTCGACCCCGACGAGTACTCCACGGCCGTGCGCGAGGCGCCAGCGGAGCTCGCCGAAGACTGCGCCA
GCCCGCGCCGCGCGCGCCTCTGCCTGCCCGCGCCGCGCGCCCCCGGGCTCGCCCGCGCCCCCGGCCCGCT
AGCGCCGGCTCCCGCCGGCGAGGGCGACCAGGAGTACGTGAGCCCCGACTGGGCAGCCGCGCCCGAGCCC
GCCGCGCCGCCCGCCGAGATCCCCTACGAGGAGTTGTGGGCGCACCAGGGGCCCGAGGGCCTCGTCCGGC
CGCCCCCAGGGCTCGATCTCATCTCCTTCGGGGCCGCGGGACCGCCGCGTCGGGAGCCGGAAGCGCCGCC
GCCTCCAGTCCCTCCCAAATCCGAGGCGGTGAAGGAGGAGTGCCGCCTGCTCAATGCCCCTCCAGTGCCT
CCCCGGGGTGGCAATGGCAGCGGCCGGCTCTCCAGCAGCCCCCCGGTTCCCCCTCGCTTCCCCAAGCTGC
AGCCGGTACATTCCCCCAGCTCCAGCCTCTCCTACTACTCCTCTGGCCTCCAGGATGGGGCGGGTTCCCG
CAGTGGCAGTGGCTCCCCATCGCCGGACACCTACTCCCTCTATTGCTACCCATGCACCTGGGGAGACTGC
AAGGTGGGCGAGTCCTCTAGCCGCCCAGCCCCCGGTCCCCTACCCTCAACCACACAGCCCAGCCAGGCCT
CCCGGGCCCTCACAGAGCCTCTGAGCGGTCGAGCCGCCTCCCTTCTGGGGGCTGACACCCCTGTTAAGAC
CTACCACAGCTGCCCTCCTCTATTCAAGCCCTCACATCCCCAGAAGCGCTTTGCTCCGTTTGGAGCTCTC
AACCCTTTTTCCGGGCCTGCCTACCCCTCAGGCCCTTCAGCGGCCTTGTCTTCTGGGCCCAGAACCACCT
CGGGTCCTGTGGCTACCTCTGGCCCTGCGTATTCCCCAGGCCCAGCCTCGCCAGGCCAGGCCTATTCAGC
TGCTCCCCCCTCCTCCTGCGCCCCCTCCTCCTCCTCTTCTTCTGAATGGCAGGAACCAGTCCTGGAGCCC
TTCGATCCCTTTGAGCTGGGGCAGGGCAGTTCTCCAGAGCCTGAGCTGCTGCGTTCTCAGGAGCCCAGAG
CAGTGGGGACACCTGGGCCTGGACCCCGCCTTTCACCACTTGGCCCCTCCAAGGCCTTTGAGCCTGAAGG
TTTGGTGCTGCACCAGGTCCCCACCCCACTGTCACCAGCTGCTCTGCAGGGACCCGAGGCGGGAGGAGCA
CTTTTTCTAACCCAAGGGCGCCTGGAAGGGCCTCCTGCCAGTCCCCGGGATGGAGCCACAGGCTTTGGAG
TCCGAGATGCCTCCTCCTGGCAGCCCCCTGCTGACCTGTCTGCACTCTCCCTGGAGGAGGTCTCTCGCAG
TCTGCGTTTCATCGGGCTCTCAGAGGATGTGGTGAGCTTCTTTGCCCGAGAACGCATCGATGGTAGCATC
TTTGTGCAGCTCAGTGAGGACATCCTGGCAGATGACTTCCACCTCACCAAGCTGCAGGTCAAGAAGATCA
TGCAGTTCATCAAAGGCTGGAGGCCCAAGATCTGA

Translation (874 aa):
MEKLAAGLAGLRWSMGAFPLDLIVSRCRLPTLACLGPGEYAEGVSERDILLIHSCRQWTTVTAHTLEEGH
YVIGPKIDIPLQYPGKFKLLEQARDVREPVRYFSSVEEVASVFPDRIFVMEAITFSVKVVSGEFSEDSEV
YNFTLHAGDELTLMGQAEILCAKTTKERSRFTTLLRKLGRAGALAGVGGGGPASAGAAGGTGGGGARPVK
GKMPCLICMNHRTNESLSLPFQCQGRFSTRSPLELQMQEGEHTVRAIIERVRLPVNVLVPSRPPRNPYDL
HPVREGHCYKLVSIISKTVVLGLALRREGPAPLHFLLLTDTPRFALPQGLLAGDPRVERLVRDSASYCRE
RFDPDEYSTAVREAPAELAEDCASPRRARLCLPAPRAPGLARAPGPLAPAPAGEGDQEYVSPDWAAAPEP
AAPPAEIPYEELWAHQGPEGLVRPPPGLDLISFGAAGPPRREPEAPPPPVPPKSEAVKEECRLLNAPPVP
PRGGNGSGRLSSSPPVPPRFPKLQPVHSPSSSLSYYSSGLQDGAGSRSGSGSPSPDTYSLYCYPCTWGDC
KVGESSSRPAPGPLPSTTQPSQASRALTEPLSGRAASLLGADTPVKTYHSCPPLFKPSHPQKRFAPFGAL
NPFSGPAYPSGPSAALSSGPRTTSGPVATSGPAYSPGPASPGQAYSAAPPSSCAPSSSSSSEWQEPVLEP
FDPFELGQGSSPEPELLRSQEPRAVGTPGPGPRLSPLGPSKAFEPEGLVLHQVPTPLSPAALQGPEAGGA
LFLTQGRLEGPPASPRDGATGFGVRDASSWQPPADLSALSLEEVSRSLRFIGLSEDVVSFFARERIDGSI
FVQLSEDILADDFHLTKLQVKKIMQFIKGWRPKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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