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Report for CCDS54328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54328.1 Public Homo sapiens 19 ZNF419 24 110 108 CCDS HistoryNCBI Gene:79744Re-query CCDS DB by CCDS ID:54328.1Re-query CCDS DB by GeneID:79744See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54328.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000442920.6 ENSP00000414709.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000442920.6Link to Ensembl Protein Viewer:ENSP00000414709.2Re-query CCDS DB by Nucleotide ID:ENST00000442920Re-query CCDS DB by Protein ID:ENSP00000414709
Original member Current member NCBI NM_001098493.2 NP_001091963.1 Accepted alive Link to Nucleotide Sequence:NM_001098493.2Link to Protein Sequence:NP_001091963.1Re-query CCDS DB by Nucleotide ID:NM_001098493Re-query CCDS DB by Protein ID:NP_001091963Link to BLAST:NP_001091963.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091963.1 497 Q96HQ0-3 497 100% 0 0

Chromosomal Locations for CCDS 54328.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57487951 57487983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57491471 57491597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57492113 57492211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57492856 57494090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGGCGGCGGCCGCCCTGAGGGACCCCGCTCAGGGCTATGTGACCTTTGAGGATGTGGCTGTCTACTTCT
CCCAGGAGGAATGGAGATTGCTTGATGACGCTCAGAGGCTCCTCTACCGCAATGTGATGCTGGAGAACTT
TACACTTCTGGCCTCTCTGGGACTTGCATCTTCCAAGACCCATGAAATAACCCAGCTGGAGTCATGGGAG
GAGCCCTTCATGCCTGCTTGGGAAGTTGTGACTTCAGCCATACCGAGAGGTTGTTGGCATGGAGCCGAGG
CTGAGGAGGCTCCTGAGCAGATTGCTTCTGTAGGACTGCTCAGTTCAAACATTCAGCAACACCAGAAGCA
GCACTGTGGAGAGAAACCCTTAAAAAGACAAGAGGGCAGGGTCCCAGTTTTGAGGAGTTGCAAAGTTCAC
CTATCAGAGAAGTCCTTGCAAAGCAGGGAGGTTGGGAAGGCCCTCCTGATCAGCTCAGGTGTTCTCAAGC
ACCAGGTGACTCACACAGGAGAGAAGTCACATAGGAGCTCCAAAAGTAGGGAGGCCTTTCATGCTGGAAA
AAGGCATTACAAATGCAGTGAATGTGGGAAAGCCTTTGGTCAGAAATATTTACTTGTTCAGCACCAGAGA
CTACATGCTGGGAAAAAGACGTATGAATGCAGTGAATGTGGGAAGTTATTTAGAGATATGTCCAACCTTT
TTATACACCAAATAGTTCACACTGGAGAAAGGCCTTACGGGTGTAGTAACTGTGGAAAATCCTTTAGCCG
TAATGCTCACCTCATTGAACACCAGAGAGTTCACACTGGAGAAAAGCCTTTTACATGCAGTGAATGTGGA
AAAGCTTTCAGGCATAATTCCACACTTGTTCAGCATCACAAAATCCACACTGGAGTAAGGCCTTATGAGT
GCAGTGAATGTGGAAAATTGTTTAGTTTCAACTCCAGCCTCATGAAACATCAGAGAATTCACACTGGAGA
AAGACCTTATAAGTGCAGTGAATGTGGAAAATTCTATAGCCACAAGTCCAACCTTATCAAACATTGGCGT
GTTCATACTGGAGAAAGGCCTTACAAGTGCAGCGACTGTGGGAAATTTTTTACCCAATGCTCAAGCCTCA
TGCAACATCAAAAAGTTCACACTGGAGAAAAGCCTTTTAAGTGCAATGAATGTGGGAGATTCTTTAGAGA
GAATTCCACCCTAGTTAGACATCAGAGGGTTCACACTGGAGCAAAGCCTTATGAGTGCAGGGAATGTGGG
AAATTTTTTAGCCAAAGCTCAACCCTCATGCAACATCGAAAAGTTCACATTGGAGAAAAGCCTTTTAAGT
GCAATGAATGTGGGAGATTGTTTAGAGAGAATTCCAGCCTTGTTAAACATCAGAGGGTTCACACTGGAGC
AAAGCCTTATGAGTGCAGGGAATGTGGGAAGTTTTTTCGCCACAACTCCAGTCTTTTTAAACATCGAAGG
ATTCACACTGGAGAAATGCAGTGA

Translation (497 aa):
MAAAALRDPAQGYVTFEDVAVYFSQEEWRLLDDAQRLLYRNVMLENFTLLASLGLASSKTHEITQLESWE
EPFMPAWEVVTSAIPRGCWHGAEAEEAPEQIASVGLLSSNIQQHQKQHCGEKPLKRQEGRVPVLRSCKVH
LSEKSLQSREVGKALLISSGVLKHQVTHTGEKSHRSSKSREAFHAGKRHYKCSECGKAFGQKYLLVQHQR
LHAGKKTYECSECGKLFRDMSNLFIHQIVHTGERPYGCSNCGKSFSRNAHLIEHQRVHTGEKPFTCSECG
KAFRHNSTLVQHHKIHTGVRPYECSECGKLFSFNSSLMKHQRIHTGERPYKCSECGKFYSHKSNLIKHWR
VHTGERPYKCSDCGKFFTQCSSLMQHQKVHTGEKPFKCNECGRFFRENSTLVRHQRVHTGAKPYECRECG
KFFSQSSTLMQHRKVHIGEKPFKCNECGRLFRENSSLVKHQRVHTGAKPYECRECGKFFRHNSSLFKHRR
IHTGEMQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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