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Report for CCDS54326.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54326.1 Public Homo sapiens 19 ZNF419 24 110 108 CCDS HistoryNCBI Gene:79744Re-query CCDS DB by CCDS ID:54326.1Re-query CCDS DB by GeneID:79744See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54326.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221735.12 ENSP00000221735.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221735.12Link to Ensembl Protein Viewer:ENSP00000221735.7Re-query CCDS DB by Nucleotide ID:ENST00000221735Re-query CCDS DB by Protein ID:ENSP00000221735
Original member Current member NCBI NM_024691.4 NP_078967.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024691.4Link to Protein Sequence:NP_078967.3Re-query CCDS DB by Nucleotide ID:NM_024691Re-query CCDS DB by Protein ID:NP_078967Link to BLAST:NP_078967.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078967.3 510 Q96HQ0-1 510 100% 0 0

Chromosomal Locations for CCDS 54326.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57487951 57487983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57490147 57490185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57491471 57491597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57492113 57492211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57492856 57494090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGGCGGCGGCCGCCCTGAGGGACCCCGCTCAGGTTCCTGTGGCTGCAGACTTGCTTACAGACCATGAGG
AGGGCTATGTGACCTTTGAGGATGTGGCTGTCTACTTCTCCCAGGAGGAATGGAGATTGCTTGATGACGC
TCAGAGGCTCCTCTACCGCAATGTGATGCTGGAGAACTTTACACTTCTGGCCTCTCTGGGACTTGCATCT
TCCAAGACCCATGAAATAACCCAGCTGGAGTCATGGGAGGAGCCCTTCATGCCTGCTTGGGAAGTTGTGA
CTTCAGCCATACCGAGAGGTTGTTGGCATGGAGCCGAGGCTGAGGAGGCTCCTGAGCAGATTGCTTCTGT
AGGACTGCTCAGTTCAAACATTCAGCAACACCAGAAGCAGCACTGTGGAGAGAAACCCTTAAAAAGACAA
GAGGGCAGGGTCCCAGTTTTGAGGAGTTGCAAAGTTCACCTATCAGAGAAGTCCTTGCAAAGCAGGGAGG
TTGGGAAGGCCCTCCTGATCAGCTCAGGTGTTCTCAAGCACCAGGTGACTCACACAGGAGAGAAGTCACA
TAGGAGCTCCAAAAGTAGGGAGGCCTTTCATGCTGGAAAAAGGCATTACAAATGCAGTGAATGTGGGAAA
GCCTTTGGTCAGAAATATTTACTTGTTCAGCACCAGAGACTACATGCTGGGAAAAAGACGTATGAATGCA
GTGAATGTGGGAAGTTATTTAGAGATATGTCCAACCTTTTTATACACCAAATAGTTCACACTGGAGAAAG
GCCTTACGGGTGTAGTAACTGTGGAAAATCCTTTAGCCGTAATGCTCACCTCATTGAACACCAGAGAGTT
CACACTGGAGAAAAGCCTTTTACATGCAGTGAATGTGGAAAAGCTTTCAGGCATAATTCCACACTTGTTC
AGCATCACAAAATCCACACTGGAGTAAGGCCTTATGAGTGCAGTGAATGTGGAAAATTGTTTAGTTTCAA
CTCCAGCCTCATGAAACATCAGAGAATTCACACTGGAGAAAGACCTTATAAGTGCAGTGAATGTGGAAAA
TTCTATAGCCACAAGTCCAACCTTATCAAACATTGGCGTGTTCATACTGGAGAAAGGCCTTACAAGTGCA
GCGACTGTGGGAAATTTTTTACCCAATGCTCAAGCCTCATGCAACATCAAAAAGTTCACACTGGAGAAAA
GCCTTTTAAGTGCAATGAATGTGGGAGATTCTTTAGAGAGAATTCCACCCTAGTTAGACATCAGAGGGTT
CACACTGGAGCAAAGCCTTATGAGTGCAGGGAATGTGGGAAATTTTTTAGCCAAAGCTCAACCCTCATGC
AACATCGAAAAGTTCACATTGGAGAAAAGCCTTTTAAGTGCAATGAATGTGGGAGATTGTTTAGAGAGAA
TTCCAGCCTTGTTAAACATCAGAGGGTTCACACTGGAGCAAAGCCTTATGAGTGCAGGGAATGTGGGAAG
TTTTTTCGCCACAACTCCAGTCTTTTTAAACATCGAAGGATTCACACTGGAGAAATGCAGTGA

Translation (510 aa):
MAAAALRDPAQVPVAADLLTDHEEGYVTFEDVAVYFSQEEWRLLDDAQRLLYRNVMLENFTLLASLGLAS
SKTHEITQLESWEEPFMPAWEVVTSAIPRGCWHGAEAEEAPEQIASVGLLSSNIQQHQKQHCGEKPLKRQ
EGRVPVLRSCKVHLSEKSLQSREVGKALLISSGVLKHQVTHTGEKSHRSSKSREAFHAGKRHYKCSECGK
AFGQKYLLVQHQRLHAGKKTYECSECGKLFRDMSNLFIHQIVHTGERPYGCSNCGKSFSRNAHLIEHQRV
HTGEKPFTCSECGKAFRHNSTLVQHHKIHTGVRPYECSECGKLFSFNSSLMKHQRIHTGERPYKCSECGK
FYSHKSNLIKHWRVHTGERPYKCSDCGKFFTQCSSLMQHQKVHTGEKPFKCNECGRFFRENSTLVRHQRV
HTGAKPYECRECGKFFSQSSTLMQHRKVHIGEKPFKCNECGRLFRENSSLVKHQRVHTGAKPYECRECGK
FFRHNSSLFKHRRIHTGEMQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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