NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 25, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54209.1 Public Homo sapiens 19 EVI5L 24 110 108 CCDS HistoryNCBI Gene:115704Re-query CCDS DB by CCDS ID:54209.1Re-query CCDS DB by GeneID:115704See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54209.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538904.7 ENSP00000445905.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000538904.7Link to Ensembl Protein Viewer:ENSP00000445905.1Re-query CCDS DB by Nucleotide ID:ENST00000538904Re-query CCDS DB by Protein ID:ENSP00000445905
Original member Current member NCBI NM_001159944.3 NP_001153416.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001159944.3Link to Protein Sequence:NP_001153416.1Re-query CCDS DB by Nucleotide ID:NM_001159944Re-query CCDS DB by Protein ID:NP_001153416Link to BLAST:NP_001153416.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153416.1 805 Q96CN4-2 805 100% 0 0

Chromosomal Locations for CCDS 54209.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7846543 7846679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7847732 7847921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7848921 7849145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7849256 7849330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7849997 7850122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7851434 7851577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7851681 7851770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7853086 7853183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7853273 7853333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7856015 7856068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7857092 7857124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7858191 7858331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7860561 7860689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7861878 7862018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7862122 7862277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7862388 7862534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7862972 7863067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7863185 7863280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7863424 7863702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2418 nt):
ATGGCGAGCCCCACTCTGAGCCCCGACTCCTCATCCCAGGAGGCCCTGTCGGCCCCCACCTGCTCCCCAA
CCTCTGACTCCGAGAACCTCAGCCCCGATGAGCTGGAGCTGCTGGCCAAGCTCGAAGAGCAGAACCGGCT
CCTGGAGGCCGACTCCAAGTCCATGCGCTCCATGAATGGCTCGCGGCGGAACAGTGGCTCCTCGCTAGTG
TCCAGCTCCTCGGCCTCCTCCAACCTGAGCCACCTGGAGGAGGACACGTGGATCCTGTGGGGCCGGATCG
CCAACGAGTGGGAGGAGTGGCGGCGCAGGAAGGAGAAGCTGCTCAAGGAGCTGATCCGCAAGGGCATCCC
CCACCACTTCCGGGCCATCGTGTGGCAGCTTCTGTGCAGCGCCACGGACATGCCCGTCAAGAACCAGTAC
TCCGAGCTGCTCAAGATGTCCTCGCCGTGCGAGAAGCTGATCCGCAGGGACATCGCCCGCACCTACCCGG
AACATGAGTTCTTCAAGGGCCAGGACAGCCTGGGCCAGGAGGTCCTCTTCAACGTCATGAAGGCATACTC
GCTGGTAGACCGGGAGGTGGGCTACTGCCAGGGAAGCGCCTTCATCGTGGGCCTGCTCCTCATGCAGATG
CCTGAGGAGGAGGCCTTCTGTGTGTTCGTGCGGCTGATGCAGGAGTACCGGCTGCGGGAGCTCTTCAAAC
CCAGCATGGCCGAGCTCGGGCTCTGCATCTATCAGTTCGAGTACATGCTGCAGGAGCAGCTCCCAGACCT
CAACACCCACTTCCGTTCCCAAAGCTTCCACACATCCATGTATGCCTCGTCCTGGTTCCTCACACTGTTC
CTGACCACCTTCCCACTCCCCGTCGCCACCCGGGTCTTTGACATCTTCATGTATGAGGGGCTGGAGATCG
TGTTCCGAGTGGGCCTCGCCCTGCTGCAGGTGAACCAGGCAGAGCTGATGCAGCTGGACATGGAGGGGAT
GTCCCAGTACTTCCAGAGAGTGATCCCCCACCAGTTCGACAGCTGCCCGGACAAGCTGGTCCTCAAAGCC
TACCAGGTCAAGTACAACCCCAAGAAGATGAAGAGGCTGGAGAAGGAGTACGCAGCCATGAAGAGCAAGG
AGATGGAGGAGCAGATCGAGATCAAAAGACTTCGGACGGAGAACCGGCTCCTGAAACAGCGGATTGAAAC
CCTAGAGAAGGAGAGCGCTGCTCTGGCTGATAGGTTAATCCAGGGGCAAGTGACACGGGCGCAGGAGGCG
GAGGAGAACTACGTCATCAAGCGGGAGCTGGCGGTGGTGCGGCAGCAGTGCAGCTCGGCGGCCGAGGACC
TGCAGAAGGCACAGAGCACCATCCGGCAGCTACAGGAGCAGCAGGAGAACCCCCGCCTCACAGAAGACTT
CGTGTCCCACCTGGAGACCGAGCTGGAGCAGTCGAGGCTGCGGGAGACGGAGACACTGGGGGCCCTTCGG
GAGATGCAGGACAAGGTTCTCGACATGGAAAAGAGGAACAGCTCGCTGCCCGACGAGAACAATGTGGCGC
AGCTGCAGGAGGAGCTGAAGGCGCTCAAGGTGCGGGAAGGCCAGGCGGTGGCCTCGACGCGAGAGCTTAA
ACTGCAGCTGCAGGAGCTCTCGGACACCTGGCAGGCCCATCTGGCCCGCGGCGGCCGCTGGAAGGAGTCC
CCACGGAAGCTGGTCGTGGGCGAGCTGCAGGACGAGCTGATGAGCGTGCGTCTGCGCGAGGCCCAGGCCC
TGGCCGAGGGCCGCGAGCTGCGGCAGCGCGTGGTGGAACTTGAGACGCAGGACCACATCCACCGCAACCT
TCTGAACCGCGTGGAGGCGGAGCGCGCGGCGCTGCAGGAGAAGCTGCAGTACCTGGCTGCACAGAACAAG
GGGCTGCAGACGCAGCTCAGCGAAAGCCGCCGCAAGCAGGCCGAGGCCGAGTGCAAGAGCAAGGAGGAGG
TGATGGCTGTGCGACTGCGGGAGGCGGACAGCATGGCTGCGGTGGCCGAGATGCGGCAGCGCATTGCCGA
GCTGGAGATCCAGAGGGAGGAAGGCCGCATCCAGGGCCAGCTGAACCACTCGGACTCATCGCAGTACATC
CGCGAGCTCAAGGACCAGATCGAGGAGCTGAAGGCCGAGGTGCGGCTGCTGAAGGGCCCGCCGCCCTTCG
AGGACCCGCTGGCTTTCGATGGGCTGAGCCTGGCGCGGCACTTGGACGAGGACTCGCTGCCGTCGTCGGA
CGAGGAGCTACTTGGCGTAGGCGTGGGCGCTGCCCTGCAGGACGCATTGTACCCTCTGTCCCCGCGCGAT
GCGCGCTTCTTCCGCCGTCTGGAGCGGCCGGCCAAGGACAGCGAGGGCAGCTCAGACAGCGACGCCGATG
AGCTGGCCGCGCCCTACAGCCAGGGTCTGGACAACTGA

Translation (805 aa):
MASPTLSPDSSSQEALSAPTCSPTSDSENLSPDELELLAKLEEQNRLLEADSKSMRSMNGSRRNSGSSLV
SSSSASSNLSHLEEDTWILWGRIANEWEEWRRRKEKLLKELIRKGIPHHFRAIVWQLLCSATDMPVKNQY
SELLKMSSPCEKLIRRDIARTYPEHEFFKGQDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQM
PEEEAFCVFVRLMQEYRLRELFKPSMAELGLCIYQFEYMLQEQLPDLNTHFRSQSFHTSMYASSWFLTLF
LTTFPLPVATRVFDIFMYEGLEIVFRVGLALLQVNQAELMQLDMEGMSQYFQRVIPHQFDSCPDKLVLKA
YQVKYNPKKMKRLEKEYAAMKSKEMEEQIEIKRLRTENRLLKQRIETLEKESAALADRLIQGQVTRAQEA
EENYVIKRELAVVRQQCSSAAEDLQKAQSTIRQLQEQQENPRLTEDFVSHLETELEQSRLRETETLGALR
EMQDKVLDMEKRNSSLPDENNVAQLQEELKALKVREGQAVASTRELKLQLQELSDTWQAHLARGGRWKES
PRKLVVGELQDELMSVRLREAQALAEGRELRQRVVELETQDHIHRNLLNRVEAERAALQEKLQYLAAQNK
GLQTQLSESRRKQAEAECKSKEEVMAVRLREADSMAAVAEMRQRIAELEIQREEGRIQGQLNHSDSSQYI
RELKDQIEELKAEVRLLKGPPPFEDPLAFDGLSLARHLDEDSLPSSDEELLGVGVGAALQDALYPLSPRD
ARFFRRLERPAKDSEGSSDSDADELAAPYSQGLDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH