NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54134.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54134.1 Public Homo sapiens 17 TMUB2 24 110 108 CCDS HistoryNCBI Gene:79089Re-query CCDS DB by CCDS ID:54134.1Re-query CCDS DB by GeneID:79089See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54134.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538716.7 ENSP00000444565.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000538716.7Link to Ensembl Protein Viewer:ENSP00000444565.1Re-query CCDS DB by Nucleotide ID:ENST00000538716Re-query CCDS DB by Protein ID:ENSP00000444565
Original member Current member EBI ENST00000587989.1 ENSP00000466971.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000587989.1Link to Ensembl Protein Viewer:ENSP00000466971.1Re-query CCDS DB by Nucleotide ID:ENST00000587989Re-query CCDS DB by Protein ID:ENSP00000466971
Original member Current member NCBI NM_001076674.3 NP_001070142.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001076674.3Link to Protein Sequence:NP_001070142.1Re-query CCDS DB by Nucleotide ID:NM_001076674Re-query CCDS DB by Protein ID:NP_001070142Link to BLAST:NP_001070142.1
Original member Current member NCBI NM_001353177.2 NP_001340106.1 Accepted alive Link to Nucleotide Sequence:NM_001353177.2Link to Protein Sequence:NP_001340106.1Re-query CCDS DB by Nucleotide ID:NM_001353177Re-query CCDS DB by Protein ID:NP_001340106Link to BLAST:NP_001340106.1
Original member Current member NCBI NM_001353181.2 NP_001340110.1 Accepted alive Link to Nucleotide Sequence:NM_001353181.2Link to Protein Sequence:NP_001340110.1Re-query CCDS DB by Nucleotide ID:NM_001353181Re-query CCDS DB by Protein ID:NP_001340110Link to BLAST:NP_001340110.1
Original member Current member NCBI NM_001353184.2 NP_001340113.1 Accepted alive Link to Nucleotide Sequence:NM_001353184.2Link to Protein Sequence:NP_001340113.1Re-query CCDS DB by Nucleotide ID:NM_001353184Re-query CCDS DB by Protein ID:NP_001340113Link to BLAST:NP_001340113.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070142.1 321 Q71RG4-1 321 100% 0 0
NP_001340106.1 321 Q71RG4-1 321 100% 0 0
NP_001340110.1 321 Q71RG4-1 321 100% 0 0
NP_001340113.1 321 Q71RG4-1 321 100% 0 0

Chromosomal Locations for CCDS 54134.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 44187709 44187743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44189022 44189588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44190501 44190864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGATTTCACGTCATCTTCAAAACAACCTCATGAGCGTGGACCCTGCCAGCAGCCAGGCCATGGAGCTCT
CTGATGTCACCCTCATTGAGGGTGTGGGTAATGAGGTGATGGTGGTGGCAGGTGTGGTGGTGCTGATTCT
AGCCTTGGTCCTAGCTTGGCTCTCTACCTACGTAGCAGACAGCGGTAGCAACCAGCTCCTGGGCGCTATT
GTGTCAGCAGGCGACACATCCGTCCTCCACCTGGGGCATGTGGACCACCTGGTGGCAGGCCAAGGCAACC
CCGAGCCAACTGAACTCCCCCATCCATCAGAGGGTAATGATGAGAAGGCTGAAGAGGCGGGTGAAGGTCG
GGGAGACTCCACTGGGGAGGCTGGAGCTGGGGGTGGTGTTGAGCCCAGCCTTGAGCATCTCCTTGACATC
CAAGGCCTGCCCAAAAGACAAGCAGGTGCAGGCAGCAGCAGTCCAGAGGCCCCCCTGAGATCTGAGGATA
GCACCTGCCTCCCTCCCAGCCCTGGCCTCATCACTGTGCGGCTCAAATTCCTCAATGATACCGAGGAGCT
GGCTGTGGCTAGGCCAGAGGATACCGTGGGTGCCCTGAAGAGCAAATACTTCCCTGGACAAGAAAGCCAG
ATGAAACTGATCTACCAGGGCCGCCTGCTACAAGACCCAGCCCGCACACTGCGTTCTCTGAACATTACCG
ACAACTGTGTGATTCACTGCCACCGCTCACCCCCAGGGTCAGCTGTTCCAGGCCCCTCAGCCTCCTTGGC
CCCCTCGGCCACTGAGCCACCCAGCCTTGGTGTCAATGTGGGCAGCCTCATGGTGCCTGTCTTTGTGGTG
CTGTTGGGTGTGGTCTGGTACTTCCGAATCAATTACCGCCAATTCTTCACAGCACCTGCCACTGTCTCCC
TGGTGGGAGTCACCGTCTTCTTCAGCTTCCTAGTATTTGGGATGTATGGACGATAA

Translation (321 aa):
MISRHLQNNLMSVDPASSQAMELSDVTLIEGVGNEVMVVAGVVVLILALVLAWLSTYVADSGSNQLLGAI
VSAGDTSVLHLGHVDHLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDI
QGLPKRQAGAGSSSPEAPLRSEDSTCLPPSPGLITVRLKFLNDTEELAVARPEDTVGALKSKYFPGQESQ
MKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSATEPPSLGVNVGSLMVPVFVV
LLGVVWYFRINYRQFFTAPATVSLVGVTVFFSFLVFGMYGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH