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Report for CCDS54111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54111.1 Public Homo sapiens 17 RDM1 24 110 108 CCDS HistoryNCBI Gene:201299Re-query CCDS DB by CCDS ID:54111.1Re-query CCDS DB by GeneID:201299See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54111.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000616596.4 ENSP00000478915.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616596.4Link to Ensembl Protein Viewer:ENSP00000478915.1Re-query CCDS DB by Nucleotide ID:ENST00000616596Re-query CCDS DB by Protein ID:ENSP00000478915
Original member Current member NCBI NM_001163121.2 NP_001156593.1 Accepted alive Link to Nucleotide Sequence:NM_001163121.2Link to Protein Sequence:NP_001156593.1Re-query CCDS DB by Nucleotide ID:NM_001163121Re-query CCDS DB by Protein ID:NP_001156593Link to BLAST:NP_001156593.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156593.1 251 Q8NG50-5 251 100% 0 0

Chromosomal Locations for CCDS 54111.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35918342 35918443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35920187 35920272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35924604 35924772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35925515 35925637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35930076 35930255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35930632 35930727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGGCGGAGTTGGTACCTTTTGCGGTTCCCATCGAGAGTGACAAAACCTTGCTAGTGTGGGAGCTGAGCT
CCGGACCCACGGCCGAGGCTTTGCATCATTCTCTGTTCACAGCATTTTCTCAGTTTGGCCTTCTGTATTC
AGTCCGGGTCTTCCCAAATGCTGCAGTGGCCCATCCTGGTTTCTATGCCGTCATTAAGTTTTATTCTGCA
AGGGCTGCCCACAGAGCCCAAAAGGCATGCGACCGGAAGCAGCTTTTTCAGAAATCTCCAGTCAAGGTTC
GTCTTGGCACCAGACATAAGGCAGTTCAACATCAAGCCCTTGCCCTGAACAGTTCCAAATGCCAAGAACT
GGCGAATTACTACTTTGGTTTCAATGGGTGTTCCAAAAGGATCATCAAGCTTCAGGAGCTTTCTGACCTT
GAAGAAAGGGAAAATGAAGATAGCATGGTGCCACTTCCGAAGCAAAGCCTGAAGTTCTTCTGTGCTTTAG
AAGTGGTGTTGCCATCCTGTGATTGCAGGAGTCCTGGCATTGGCTTGGTGGAGGAGCCTATGGATAAGGT
GGAGGAAGAAAGTGGTAAAATAGCTGTGGAGTACAGACCCAGTGAAGACATCGTAGGTGTCAGATGCGAA
GAAGAACTACACGGTTTAATTCAAGTCCCTTGCTCTCCCTGGAAGCAGTATGGCCAAGAGGAGGAAGGGT
ATCTCTCGGATTTCAGCTTGGAGGAGGAAGAGTTCAGGCTGCCAGAACTTGACTAG

Translation (251 aa):
MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSA
RAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDL
EERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSEDIVGVRCE
EELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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